Closed biosimulators-daemon closed 3 years ago
Thank you @biosimulators-daemon for your submission to the BioSimulators simulator validation/submission system!
The BioSimulators validator bot is validating the specifications of your simulator, validating your Docker image and committing your simulator to the BioSimulators registry.
We will discuss any concerns with your submission in this issue.
A complete log of your simulator submission job will be available here. The results of the validation of your tool will also be saved as a JSON file.A link to this file will be available from the "Artifacts" section at the bottom of this page.
- You (@biosimulators-daemon) do not have permissions to update the specifications of LibSBMLSim. Only the members of @biosimulators/libsbmlsim can update the specifications of LibSBMLSim. Please contact the members of this group to request permissions to update LibSBMLSim.
Thank you @biosimulators-daemon for your submission to the BioSimulators simulator validation/submission system!
The BioSimulators validator bot is validating the specifications of your simulator, validating your Docker image and committing your simulator to the BioSimulators registry.
We will discuss any concerns with your submission in this issue.
A complete log of your simulator submission job will be available here. The results of the validation of your tool will also be saved as a JSON file.A link to this file will be available from the "Artifacts" section at the bottom of this page.
The specifications of your simulator is valid!
Executed 66 test cases
Passed 7 test cases:
cli.CliDescribesSupportedEnvironmentVariablesInline
cli.CliDisplaysHelpInline
cli.CliDisplaysVersionInformationInline
docker_image.DeclaresSupportedEnvironmentVariables
docker_image.DefaultUserIsRoot
docker_image.HasBioContainersLabels
docker_image.HasOciLabels
Failed 0 test cases
Skipped 59 test cases:
combine_archive.CombineArchiveHasSedDocumentsInNestedDirectories
combine_archive.CombineArchiveHasSedDocumentsWithSameNamesInDifferentInNestedDirectories
combine_archive.WhenACombineArchiveHasAMasterFileSimulatorOnlyExecutesThisFile
combine_archive.WhenACombineArchiveHasNoMasterFileSimulatorExecutesAllSedDocuments
docker_image.SingularityImageExecutesSimulationsSuccessfully
log.SimulatorReportsTheStatusOfTheExecutionOfCombineArchives
log.SimulatorReportsTheStatusOfTheExecutionOfSedDocuments
log.SimulatorReportsTheStatusOfTheExecutionOfSedOutputs
log.SimulatorReportsTheStatusOfTheExecutionOfSedTasks
published_project.SimulatorCanExecutePublishedProject:bngl/Dolan-PLoS-Comput-Biol-2015-NHEJ
published_project.SimulatorCanExecutePublishedProject:bngl/test-bngl
published_project.SimulatorCanExecutePublishedProject:cellml/Lorenz-system
published_project.SimulatorCanExecutePublishedProject:neuroml-lems/Hodgkin-Huxley-cell-CVODE
published_project.SimulatorCanExecutePublishedProject:neuroml-lems/Hodgkin-Huxley-cell-Euler
published_project.SimulatorCanExecutePublishedProject:sbml-core/Caravagna-J-Theor-Biol-2010-tumor-suppressive-oscillations
published_project.SimulatorCanExecutePublishedProject:sbml-core/Ciliberto-J-Cell-Biol-2003-morphogenesis-checkpoint-continuous
published_project.SimulatorCanExecutePublishedProject:sbml-core/Edelstein-Biol-Cybern-1996-Nicotinic-excitation
published_project.SimulatorCanExecutePublishedProject:sbml-core/Parmar-BMC-Syst-Biol-2017-iron-distribution
published_project.SimulatorCanExecutePublishedProject:sbml-core/Szymanska-J-Theor-Biol-2009-HSP-synthesis
published_project.SimulatorCanExecutePublishedProject:sbml-core/Tomida-EMBO-J-2003-NFAT-translocation
published_project.SimulatorCanExecutePublishedProject:sbml-core/Varusai-Sci-Rep-2018-mTOR-signaling-LSODA-LSODAR-SBML
published_project.SimulatorCanExecutePublishedProject:sbml-core/Vilar-PNAS-2002-minimal-circardian-clock
published_project.SimulatorCanExecutePublishedProject:sbml-core/Vilar-PNAS-2002-minimal-circardian-clock-continuous
published_project.SimulatorCanExecutePublishedProject:sbml-core/Vilar-PNAS-2002-minimal-circardian-clock-discrete-NRM
published_project.SimulatorCanExecutePublishedProject:sbml-core/Vilar-PNAS-2002-minimal-circardian-clock-discrete-SSA
published_project.SimulatorCanExecutePublishedProject:sbml-fbc/Escherichia-coli-core-metabolism
published_project.SimulatorCanExecutePublishedProject:sbml-qual/Chaouiya-BMC-Syst-Biol-2013-EGF-TNFa-signaling
published_project.SimulatorCanExecutePublishedProject:smoldyn/Lotka-Volterra
results_report.SimulatorGeneratesReportsOfSimulationResults
sedml.SimulatorCanResolveModelSourcesDefinedByUriFragments
sedml.SimulatorCanResolveModelSourcesDefinedByUriFragmentsAndInheritChanges
sedml.SimulatorProducesLinear2DPlots
sedml.SimulatorProducesLinear3DPlots
sedml.SimulatorProducesLogarithmic2DPlots
sedml.SimulatorProducesLogarithmic3DPlots
sedml.SimulatorProducesMultiplePlots
sedml.SimulatorProducesReportsWithCuratedNumberOfDimensions
sedml.SimulatorSupportsAddReplaceRemoveModelElementChanges
sedml.SimulatorSupportsAlgorithmParameters
sedml.SimulatorSupportsComputeModelChanges
sedml.SimulatorSupportsDataGeneratorsWithDifferentShapes
sedml.SimulatorSupportsDataSetsWithDifferentShapes
sedml.SimulatorSupportsModelAttributeChanges
sedml.SimulatorSupportsModelsSimulationsTasksDataGeneratorsAndReports
sedml.SimulatorSupportsMultipleReportsPerSedDocument
sedml.SimulatorSupportsMultipleTasksPerSedDocument
sedml.SimulatorSupportsRepeatedTasksWithChanges
sedml.SimulatorSupportsRepeatedTasksWithFunctionalRangeVariables
sedml.SimulatorSupportsRepeatedTasksWithFunctionalRanges
sedml.SimulatorSupportsRepeatedTasksWithLinearUniformRanges
sedml.SimulatorSupportsRepeatedTasksWithLogarithmicUniformRanges
sedml.SimulatorSupportsRepeatedTasksWithMultipleSubTasks
sedml.SimulatorSupportsRepeatedTasksWithNestedFunctionalRanges
sedml.SimulatorSupportsRepeatedTasksWithNestedRepeatedTasks
sedml.SimulatorSupportsRepeatedTasksWithSubTasksOfMixedTypes
sedml.SimulatorSupportsRepeatedTasksWithVectorRanges
sedml.SimulatorSupportsSubstitutingAlgorithms
sedml.SimulatorSupportsUniformTimeCoursesWithNonZeroInitialTimes
sedml.SimulatorSupportsUniformTimeCoursesWithNonZeroOutputStartTimes
cli.CliDescribesSupportedEnvironmentVariablesInline
(5.7 s)Test that the inline help for a command-line interface describes the environment variables that the simulator supports.
Warnings:
The inline help for a command-line interface for a simulation tool should describe the environment variables that the simulation tool supports.
The command-line interface does not describe the following standard environment variables recognized by BioSimulators:
- 'ALGORITHM_SUBSTITUTION_POLICY'
If the simulation tool implements these variables, they should be described in the inline help for its command-line interface.
Note, support for these environment variables is optional. Simulation tools are not required to support these variables.
Log:
docker_image.HasBioContainersLabels
(0.5 s)Test that a Docker image has BioContainers labels with metadata about the image
Warnings:
The Docker image should have the following BioContainers labels:
extra.identifiers.biotools
Log:
combine_archive.CombineArchiveHasSedDocumentsInNestedDirectories
(0.0 s)Test that SED documents in nested directories can be executed
Reason for skip:
No curated COMBINE/OMEX archives are available to generate archives for testing
Log:
combine_archive.CombineArchiveHasSedDocumentsWithSameNamesInDifferentInNestedDirectories
(0.0 s)Test that SED documents with the same names in nested directories can be executed and their outputs are saved to distinct paths
Reason for skip:
No curated COMBINE/OMEX archives are available to generate archives for testing
Log:
combine_archive.WhenACombineArchiveHasAMasterFileSimulatorOnlyExecutesThisFile
(0.0 s)Test that when a COMBINE/OMEX archive defines a (single) master file, the simulator only executes this file.
Reason for skip:
No curated COMBINE/OMEX archives are available to generate archives for testing
Log:
combine_archive.WhenACombineArchiveHasNoMasterFileSimulatorExecutesAllSedDocuments
(0.0 s)Test that when a COMBINE/OMEX archive does not have a defined master file, the simulator executes all SED-ML files.
Reason for skip:
No curated COMBINE/OMEX archives are available to generate archives for testing
Log:
docker_image.SingularityImageExecutesSimulationsSuccessfully
(0.0 s)Test that the Singularity version of a Docker image can sucessfully execute COMBINE archives
Reason for skip:
No curated COMBINE/OMEX archives are available to generate archives for testing
Log:
log.SimulatorReportsTheStatusOfTheExecutionOfCombineArchives
(0.0 s)Test that simulator logs the execution of COMBINE/OMEX archives
Reason for skip:
No curated COMBINE/OMEX archives are available to generate archives for testing
Log:
log.SimulatorReportsTheStatusOfTheExecutionOfSedDocuments
(0.0 s)Test that simulator logs the execution of individual SED document in COMBINE/OMEX archives
Reason for skip:
No curated COMBINE/OMEX archives are available to generate archives for testing
Log:
log.SimulatorReportsTheStatusOfTheExecutionOfSedOutputs
(0.0 s)Test that simulator logs the execution of individual SED outputs in COMBINE/OMEX archives
Reason for skip:
No curated COMBINE/OMEX archives are available to generate archives for testing
Log:
log.SimulatorReportsTheStatusOfTheExecutionOfSedTasks
(0.0 s)Test that simulator logs the execution of individual SED tasks in COMBINE/OMEX archives
Reason for skip:
No curated COMBINE/OMEX archives are available to generate archives for testing
Log:
published_project.SimulatorCanExecutePublishedProject:bngl/Dolan-PLoS-Comput-Biol-2015-NHEJ
(0.0 s)Required model formats and simulation algorithms for SED tasks:
Format: format_3972
Algorithm: KISAO_0000263
Reason for skip:
Case requires model formats format_3972 and simulation algorithms KISAO_0000263
Log:
published_project.SimulatorCanExecutePublishedProject:bngl/test-bngl
(0.0 s)Required model formats and simulation algorithms for SED tasks:
Format: format_3972
Algorithm: KISAO_0000019
Reason for skip:
Case requires model formats format_3972 and simulation algorithms KISAO_0000019
Log:
published_project.SimulatorCanExecutePublishedProject:cellml/Lorenz-system
(0.0 s)Required model formats and simulation algorithms for SED tasks:
Format: format_3240
Algorithm: KISAO_0000019
Reason for skip:
Case requires model formats format_3240 and simulation algorithms KISAO_0000019
Log:
published_project.SimulatorCanExecutePublishedProject:neuroml-lems/Hodgkin-Huxley-cell-CVODE
(0.0 s)Required model formats and simulation algorithms for SED tasks:
Format: format_9004
Algorithm: KISAO_0000019
Reason for skip:
Case requires model formats format_9004 and simulation algorithms KISAO_0000019
Log:
published_project.SimulatorCanExecutePublishedProject:neuroml-lems/Hodgkin-Huxley-cell-Euler
(0.0 s)Required model formats and simulation algorithms for SED tasks:
Format: format_9004
Algorithm: KISAO_0000030
Reason for skip:
Case requires model formats format_9004 and simulation algorithms KISAO_0000030
Log:
published_project.SimulatorCanExecutePublishedProject:sbml-core/Caravagna-J-Theor-Biol-2010-tumor-suppressive-oscillations
(0.0 s)Required model formats and simulation algorithms for SED tasks:
Format: format_2585
Algorithm: KISAO_0000019
Reason for skip:
Case requires model formats format_2585 and simulation algorithms KISAO_0000019
Log:
published_project.SimulatorCanExecutePublishedProject:sbml-core/Ciliberto-J-Cell-Biol-2003-morphogenesis-checkpoint-continuous
(0.0 s)Required model formats and simulation algorithms for SED tasks:
Format: format_2585
Algorithm: KISAO_0000019
Reason for skip:
Case requires model formats format_2585 and simulation algorithms KISAO_0000019
Log:
published_project.SimulatorCanExecutePublishedProject:sbml-core/Edelstein-Biol-Cybern-1996-Nicotinic-excitation
(0.0 s)Required model formats and simulation algorithms for SED tasks:
Format: format_2585
Algorithm: KISAO_0000088
Reason for skip:
Case requires model formats format_2585 and simulation algorithms KISAO_0000088
Log:
published_project.SimulatorCanExecutePublishedProject:sbml-core/Parmar-BMC-Syst-Biol-2017-iron-distribution
(0.0 s)Required model formats and simulation algorithms for SED tasks:
Format: format_2585
Algorithm: KISAO_000019
Reason for skip:
Case requires model formats format_2585 and simulation algorithms KISAO_000019
Log:
published_project.SimulatorCanExecutePublishedProject:sbml-core/Szymanska-J-Theor-Biol-2009-HSP-synthesis
(0.0 s)Required model formats and simulation algorithms for SED tasks:
Format: format_2585
Algorithm: KISAO_0000496
Reason for skip:
Case requires model formats format_2585 and simulation algorithms KISAO_0000496
Log:
published_project.SimulatorCanExecutePublishedProject:sbml-core/Tomida-EMBO-J-2003-NFAT-translocation
(0.0 s)Required model formats and simulation algorithms for SED tasks:
Format: format_2585
Algorithm: KISAO_0000560
Reason for skip:
Case requires model formats format_2585 and simulation algorithms KISAO_0000560
Log:
published_project.SimulatorCanExecutePublishedProject:sbml-core/Varusai-Sci-Rep-2018-mTOR-signaling-LSODA-LSODAR-SBML
(0.0 s)Required model formats and simulation algorithms for SED tasks:
Format: format_2585
Algorithm: KISAO_0000560
Reason for skip:
Case requires model formats format_2585 and simulation algorithms KISAO_0000560
Log:
published_project.SimulatorCanExecutePublishedProject:sbml-core/Vilar-PNAS-2002-minimal-circardian-clock
(0.0 s)Required model formats and simulation algorithms for SED tasks:
Format: format_2585
Algorithm: KISAO_0000019
Format: format_2585
Algorithm: KISAO_0000027
Format: format_2585
Algorithm: KISAO_0000030
Reason for skip:
Case requires model formats format_2585 and simulation algorithms KISAO_0000019, KISAO_0000027, KISAO_0000030
Log:
published_project.SimulatorCanExecutePublishedProject:sbml-core/Vilar-PNAS-2002-minimal-circardian-clock-continuous
(0.0 s)Required model formats and simulation algorithms for SED tasks:
Format: format_2585
Algorithm: KISAO_0000019
Format: format_2585
Algorithm: KISAO_0000030
Reason for skip:
Case requires model formats format_2585 and simulation algorithms KISAO_0000019, KISAO_0000030
Log:
published_project.SimulatorCanExecutePublishedProject:sbml-core/Vilar-PNAS-2002-minimal-circardian-clock-discrete-NRM
(0.0 s)Required model formats and simulation algorithms for SED tasks:
Format: format_2585
Algorithm: KISAO_0000027
Reason for skip:
Case requires model formats format_2585 and simulation algorithms KISAO_0000027
Log:
published_project.SimulatorCanExecutePublishedProject:sbml-core/Vilar-PNAS-2002-minimal-circardian-clock-discrete-SSA
(0.0 s)Required model formats and simulation algorithms for SED tasks:
Format: format_2585
Algorithm: KISAO_0000029
Reason for skip:
Case requires model formats format_2585 and simulation algorithms KISAO_0000029
Log:
published_project.SimulatorCanExecutePublishedProject:sbml-fbc/Escherichia-coli-core-metabolism
(0.0 s)Required model formats and simulation algorithms for SED tasks:
Format: format_2585
Algorithm: KISAO_0000437
Reason for skip:
Case requires model formats format_2585 and simulation algorithms KISAO_0000437
Log:
published_project.SimulatorCanExecutePublishedProject:sbml-qual/Chaouiya-BMC-Syst-Biol-2013-EGF-TNFa-signaling
(0.0 s)Required model formats and simulation algorithms for SED tasks:
Format: format_2585
Algorithm: KISAO_0000449
Reason for skip:
Case requires model formats format_2585 and simulation algorithms KISAO_0000449
Log:
published_project.SimulatorCanExecutePublishedProject:smoldyn/Lotka-Volterra
(0.0 s)Required model formats and simulation algorithms for SED tasks:
Format: format_9001
Algorithm: KISAO_0000057
Reason for skip:
Case requires model formats format_9001 and simulation algorithms KISAO_0000057
Log:
results_report.SimulatorGeneratesReportsOfSimulationResults
(0.0 s)Test that when a COMBINE/OMEX archive defines a (single) master file, the simulator only executes this file.
Reason for skip:
No curated COMBINE/OMEX archives are available to generate archives for testing
Log:
sedml.SimulatorCanResolveModelSourcesDefinedByUriFragments
(0.0 s)Test that a simulator can resolve model sources defined by URI fragments (e.g., #model1
).
Reason for skip:
No curated COMBINE/OMEX archives are available to generate archives for testing
Log:
sedml.SimulatorCanResolveModelSourcesDefinedByUriFragmentsAndInheritChanges
(0.0 s)Test that a simulator can resolve model sources defined by URI fragments (e.g., #model1
) and inherit the changes of the model.
Reason for skip:
No curated COMBINE/OMEX archives are available to generate archives for testing
Log:
sedml.SimulatorProducesLinear2DPlots
(0.0 s)Test that a simulator produces linear 2D plots
Reason for skip:
No curated COMBINE/OMEX archives are available to generate archives for testing
Log:
sedml.SimulatorProducesLinear3DPlots
(0.0 s)Test that a simulator produces linear 3D plots
Reason for skip:
No curated COMBINE/OMEX archives are available to generate archives for testing
Log:
sedml.SimulatorProducesLogarithmic2DPlots
(0.0 s)Test that a simulator produces logarithmic 2D plots
Reason for skip:
No curated COMBINE/OMEX archives are available to generate archives for testing
Log:
sedml.SimulatorProducesLogarithmic3DPlots
(0.0 s)Test that a simulator produces logarithmic 3D plots
Reason for skip:
No curated COMBINE/OMEX archives are available to generate archives for testing
Log:
sedml.SimulatorProducesMultiplePlots
(0.0 s)Test that a simulator produces multiple plots
Reason for skip:
No curated COMBINE/OMEX archives are available to generate archives for testing
Log:
sedml.SimulatorProducesReportsWithCuratedNumberOfDimensions
(0.0 s)Test that that the curated number of output dimensions matches the actual number of output dimensions
Reason for skip:
No curated COMBINE/OMEX archives are available to generate archives for testing
Log:
sedml.SimulatorSupportsAddReplaceRemoveModelElementChanges
(0.0 s)Test that a simulator supports model changes that involve adding, replacing, and removing model elements.
Reason for skip:
No curated COMBINE/OMEX archives are available to generate archives for testing
Log:
sedml.SimulatorSupportsAlgorithmParameters
(0.0 s)Test that a simulator supports setting the values of parameters of algorithms
Reason for skip:
No curated COMBINE/OMEX archives are available to generate archives for testing
Log:
sedml.SimulatorSupportsComputeModelChanges
(0.0 s)Test that a simulator supports compute model changes
Reason for skip:
No curated COMBINE/OMEX archives are available to generate archives for testing
Log:
sedml.SimulatorSupportsDataGeneratorsWithDifferentShapes
(0.0 s)Test that a simulator supports data generators with different shapes
Reason for skip:
No curated COMBINE/OMEX archives are available to generate archives for testing
Log:
sedml.SimulatorSupportsDataSetsWithDifferentShapes
(0.0 s)Test that a simulator supports data generators with different shapes
Reason for skip:
No curated COMBINE/OMEX archives are available to generate archives for testing
Log:
sedml.SimulatorSupportsModelAttributeChanges
(0.0 s)Test that a simulator supports changes to the attributes of model elements
Reason for skip:
No curated COMBINE/OMEX archives are available to generate archives for testing
Log:
sedml.SimulatorSupportsModelsSimulationsTasksDataGeneratorsAndReports
(0.0 s)Test that a simulator supports the core elements of SED: models, simulations, tasks, data generators for individual variables, and reports
Reason for skip:
No curated COMBINE/OMEX archives are available to generate archives for testing
Log:
sedml.SimulatorSupportsMultipleReportsPerSedDocument
(0.0 s)Test that a simulator supports multiple reports per SED document
Reason for skip:
No curated COMBINE/OMEX archives are available to generate archives for testing
Log:
sedml.SimulatorSupportsMultipleTasksPerSedDocument
(0.0 s)Test that a simulator supports multiple tasks per SED document
Reason for skip:
No curated COMBINE/OMEX archives are available to generate archives for testing
Log:
sedml.SimulatorSupportsRepeatedTasksWithChanges
(0.0 s)Test that a simulator supports repeated tasks with multiple subtasks
Reason for skip:
No curated COMBINE/OMEX archives are available to generate archives for testing
Log:
sedml.SimulatorSupportsRepeatedTasksWithFunctionalRangeVariables
(0.0 s)Test that a simulator supports repeated tasks over nested functional ranges based on model (specification) variables
Reason for skip:
No curated COMBINE/OMEX archives are available to generate archives for testing
Log:
sedml.SimulatorSupportsRepeatedTasksWithFunctionalRanges
(0.0 s)Test that a simulator supports repeated tasks over functional ranges
Reason for skip:
No curated COMBINE/OMEX archives are available to generate archives for testing
Log:
sedml.SimulatorSupportsRepeatedTasksWithLinearUniformRanges
(0.0 s)Test that a simulator supports repeated tasks over uniform ranges
Reason for skip:
No curated COMBINE/OMEX archives are available to generate archives for testing
Log:
sedml.SimulatorSupportsRepeatedTasksWithLogarithmicUniformRanges
(0.0 s)Test that a simulator supports repeated tasks over uniform ranges
Reason for skip:
No curated COMBINE/OMEX archives are available to generate archives for testing
Log:
sedml.SimulatorSupportsRepeatedTasksWithMultipleSubTasks
(0.0 s)Test that a simulator supports repeated tasks with multiple subtasks
Reason for skip:
No curated COMBINE/OMEX archives are available to generate archives for testing
Log:
sedml.SimulatorSupportsRepeatedTasksWithNestedFunctionalRanges
(0.0 s)Test that a simulator supports repeated tasks over nested functional ranges based on model (specification) variables
Reason for skip:
No curated COMBINE/OMEX archives are available to generate archives for testing
Log:
sedml.SimulatorSupportsRepeatedTasksWithNestedRepeatedTasks
(0.0 s)Test that a simulator supports nested repeated tasks
Reason for skip:
No curated COMBINE/OMEX archives are available to generate archives for testing
Log:
sedml.SimulatorSupportsRepeatedTasksWithSubTasksOfMixedTypes
(0.0 s)Test that a simulator supports repeated tasks whose sub-tasks have mixed types. Also tests that sub-types executed in order of the values of their order
attributes and that reports of the results of repeated tasks handle sub-tasks to produce results of different shapes.
Reason for skip:
No curated COMBINE/OMEX archives are available to generate archives for testing
Log:
sedml.SimulatorSupportsRepeatedTasksWithVectorRanges
(0.0 s)Test that a simulator supports repeated tasks over vector ranges
Reason for skip:
No curated COMBINE/OMEX archives are available to generate archives for testing
Log:
sedml.SimulatorSupportsSubstitutingAlgorithms
(0.0 s)Check that a simulator can substitute algorithms that it doesn't implement with similar algorithms when the algorithm substitution policy is less restrictive than :obj:AlgorithmSubstitutionPolicy.SAME_METHOD
. Also check that a simulator ignores unsupported algorithm parameters when the algorithm substitution policy is less restrictive than :obj:AlgorithmSubstitutionPolicy.NONE
.
Reason for skip:
No curated COMBINE/OMEX archives are available to generate archives for testing
Log:
sedml.SimulatorSupportsUniformTimeCoursesWithNonZeroInitialTimes
(0.0 s)Test that a simulator supports multiple time courses with non-zero initial times
Reason for skip:
No curated COMBINE/OMEX archives are available to generate archives for testing
Log:
sedml.SimulatorSupportsUniformTimeCoursesWithNonZeroOutputStartTimes
(0.0 s)Test that a simulator supports time courses with non-zero output start times
Reason for skip:
No curated COMBINE/OMEX archives are available to generate archives for testing
Log:
No test cases are applicable to your simulator. Please use this issue to share appropriate test COMBINE/OMEX files. The BioSimulators Team will add these files to this validation program and then re-review your simulator.
Thank you @biosimulators-daemon for your submission to the BioSimulators simulator validation/submission system!
The BioSimulators validator bot is validating the specifications of your simulator, validating your Docker image and committing your simulator to the BioSimulators registry.
We will discuss any concerns with your submission in this issue.
A complete log of your simulator submission job will be available here. The results of the validation of your tool will also be saved as a JSON file.A link to this file will be available from the "Artifacts" section at the bottom of this page.
The specifications of your simulator is valid!
Executed 67 test cases
Passed 44 test cases:
cli.CliDescribesSupportedEnvironmentVariablesInline
cli.CliDisplaysHelpInline
cli.CliDisplaysVersionInformationInline
combine_archive.CombineArchiveHasSedDocumentsInNestedDirectories
combine_archive.CombineArchiveHasSedDocumentsWithSameNamesInDifferentInNestedDirectories
combine_archive.WhenACombineArchiveHasAMasterFileSimulatorOnlyExecutesThisFile
combine_archive.WhenACombineArchiveHasNoMasterFileSimulatorExecutesAllSedDocuments
docker_image.DeclaresSupportedEnvironmentVariables
docker_image.DefaultUserIsRoot
docker_image.HasBioContainersLabels
docker_image.HasOciLabels
docker_image.SingularityImageExecutesSimulationsSuccessfully
log.SimulatorReportsTheStatusOfTheExecutionOfCombineArchives
log.SimulatorReportsTheStatusOfTheExecutionOfSedDocuments
log.SimulatorReportsTheStatusOfTheExecutionOfSedOutputs
log.SimulatorReportsTheStatusOfTheExecutionOfSedTasks
published_project.SimulatorCanExecutePublishedProject:sbml-core/Ciliberto-J-Cell-Biol-2003-morphogenesis-checkpoint-Fehlberg
results_report.SimulatorGeneratesReportsOfSimulationResults
sedml.SimulatorCanResolveModelSourcesDefinedByUriFragments
sedml.SimulatorCanResolveModelSourcesDefinedByUriFragmentsAndInheritChanges
sedml.SimulatorProducesLinear2DPlots
sedml.SimulatorProducesLogarithmic2DPlots
sedml.SimulatorProducesMultiplePlots
sedml.SimulatorProducesReportsWithCuratedNumberOfDimensions
sedml.SimulatorSupportsAddReplaceRemoveModelElementChanges
sedml.SimulatorSupportsComputeModelChanges
sedml.SimulatorSupportsDataGeneratorsWithDifferentShapes
sedml.SimulatorSupportsDataSetsWithDifferentShapes
sedml.SimulatorSupportsModelAttributeChanges
sedml.SimulatorSupportsModelsSimulationsTasksDataGeneratorsAndReports
sedml.SimulatorSupportsMultipleReportsPerSedDocument
sedml.SimulatorSupportsMultipleTasksPerSedDocument
sedml.SimulatorSupportsRepeatedTasksWithChanges
sedml.SimulatorSupportsRepeatedTasksWithFunctionalRangeVariables
sedml.SimulatorSupportsRepeatedTasksWithFunctionalRanges
sedml.SimulatorSupportsRepeatedTasksWithLinearUniformRanges
sedml.SimulatorSupportsRepeatedTasksWithLogarithmicUniformRanges
sedml.SimulatorSupportsRepeatedTasksWithMultipleSubTasks
sedml.SimulatorSupportsRepeatedTasksWithNestedFunctionalRanges
sedml.SimulatorSupportsRepeatedTasksWithNestedRepeatedTasks
sedml.SimulatorSupportsRepeatedTasksWithSubTasksOfMixedTypes
sedml.SimulatorSupportsRepeatedTasksWithVectorRanges
sedml.SimulatorSupportsSubstitutingAlgorithms
sedml.SimulatorSupportsUniformTimeCoursesWithNonZeroOutputStartTimes
Failed 0 test cases
Skipped 23 test cases:
published_project.SimulatorCanExecutePublishedProject:bngl/Dolan-PLoS-Comput-Biol-2015-NHEJ
published_project.SimulatorCanExecutePublishedProject:bngl/test-bngl
published_project.SimulatorCanExecutePublishedProject:cellml/Lorenz-system
published_project.SimulatorCanExecutePublishedProject:neuroml-lems/Hodgkin-Huxley-cell-CVODE
published_project.SimulatorCanExecutePublishedProject:neuroml-lems/Hodgkin-Huxley-cell-Euler
published_project.SimulatorCanExecutePublishedProject:sbml-core/Caravagna-J-Theor-Biol-2010-tumor-suppressive-oscillations
published_project.SimulatorCanExecutePublishedProject:sbml-core/Ciliberto-J-Cell-Biol-2003-morphogenesis-checkpoint-continuous
published_project.SimulatorCanExecutePublishedProject:sbml-core/Edelstein-Biol-Cybern-1996-Nicotinic-excitation
published_project.SimulatorCanExecutePublishedProject:sbml-core/Parmar-BMC-Syst-Biol-2017-iron-distribution
published_project.SimulatorCanExecutePublishedProject:sbml-core/Szymanska-J-Theor-Biol-2009-HSP-synthesis
published_project.SimulatorCanExecutePublishedProject:sbml-core/Tomida-EMBO-J-2003-NFAT-translocation
published_project.SimulatorCanExecutePublishedProject:sbml-core/Varusai-Sci-Rep-2018-mTOR-signaling-LSODA-LSODAR-SBML
published_project.SimulatorCanExecutePublishedProject:sbml-core/Vilar-PNAS-2002-minimal-circardian-clock
published_project.SimulatorCanExecutePublishedProject:sbml-core/Vilar-PNAS-2002-minimal-circardian-clock-continuous
published_project.SimulatorCanExecutePublishedProject:sbml-core/Vilar-PNAS-2002-minimal-circardian-clock-discrete-NRM
published_project.SimulatorCanExecutePublishedProject:sbml-core/Vilar-PNAS-2002-minimal-circardian-clock-discrete-SSA
published_project.SimulatorCanExecutePublishedProject:sbml-fbc/Escherichia-coli-core-metabolism
published_project.SimulatorCanExecutePublishedProject:sbml-qual/Chaouiya-BMC-Syst-Biol-2013-EGF-TNFa-signaling
published_project.SimulatorCanExecutePublishedProject:smoldyn/Lotka-Volterra
sedml.SimulatorProducesLinear3DPlots
sedml.SimulatorProducesLogarithmic3DPlots
sedml.SimulatorSupportsAlgorithmParameters
sedml.SimulatorSupportsUniformTimeCoursesWithNonZeroInitialTimes
cli.CliDescribesSupportedEnvironmentVariablesInline
(3.5 s)Test that the inline help for a command-line interface describes the environment variables that the simulator supports.
Warnings:
The inline help for a command-line interface for a simulation tool should describe the environment variables that the simulation tool supports.
The command-line interface does not describe the following standard environment variables recognized by BioSimulators:
- 'ALGORITHM_SUBSTITUTION_POLICY'
If the simulation tool implements these variables, they should be described in the inline help for its command-line interface.
Note, support for these environment variables is optional. Simulation tools are not required to support these variables.
Log:
docker_image.HasBioContainersLabels
(0.6 s)Test that a Docker image has BioContainers labels with metadata about the image
Warnings:
The Docker image should have the following BioContainers labels:
extra.identifiers.biotools
Log:
published_project.SimulatorCanExecutePublishedProject:sbml-core/Ciliberto-J-Cell-Biol-2003-morphogenesis-checkpoint-Fehlberg
(9.0 s)Required model formats and simulation algorithms for SED tasks:
Format: format_2585
Algorithm: KISAO_0000086
Warnings:
Unexpected reports were produced:
simulation_1.sedml/Figure_3a
simulation_1.sedml/Figure_3b
simulation_1.sedml/Figure_3c
simulation_1.sedml/Figure_3d
Plots were not produced:
simulation.sedml/Figure_3a
simulation.sedml/Figure_3b
simulation.sedml/Figure_3c
simulation.sedml/Figure_3d
Extra plots were produced:
simulation_1.sedml/Figure_3a
simulation_1.sedml/Figure_3b
simulation_1.sedml/Figure_3c
simulation_1.sedml/Figure_3d
Log:
/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: [33mThe SED document is potentially incorrect.
- Model `Ciliberto2003_Morphogenesis` may be invalid.
- The model file `BIOMD0000000297_url.xml` may be invalid.
- The value of the 'sboTerm' attribute on a <species> is expected to be an SBO identifier (http://www.biomodels.net/SBO/). In SBML Level 2 prior to Version 4 it is expected to refer to a participant physical type (i.e., terms derived from SBO:0000236, "participant physical type"); in Versions 4 and above it is expected to refer to a material entity (i.e., terms derived from SBO:0000240, "material entity").
Reference: L2V4 Section 5
SBO term 'SBO:0000014' on the <species> is not in the appropriate branch.
- The value of the 'sboTerm' attribute on a <species> is expected to be an SBO identifier (http://www.biomodels.net/SBO/). In SBML Level 2 prior to Version 4 it is expected to refer to a participant physical type (i.e., terms derived from SBO:0000236, "participant physical type"); in Versions 4 and above it is expected to refer to a material entity (i.e., terms derived from SBO:0000240, "material entity").
Reference: L2V4 Section 5
SBO term 'SBO:0000236' on the <species> is not in the appropriate branch.
- The value of the 'sboTerm' attribute on a <species> is expected to be an SBO identifier (http://www.biomodels.net/SBO/). In SBML Level 2 prior to Version 4 it is expected to refer to a participant physical type (i.e., terms derived from SBO:0000236, "participant physical type"); in Versions 4 and above it is expected to refer to a material entity (i.e., terms derived from SBO:0000240, "material entity").
Reference: L2V4 Section 5
SBO term 'SBO:0000236' on the <species> is not in the appropriate branch.
- The value of the 'sboTerm' attribute on a <parameter> is expected to be an SBO identifier (http://www.biomodels.net/SBO/) referring to a quantitative parameter defined in SBO (i.e., terms derived from SBO:0000002, "quantitative systems description parameter").
Reference: L2V4 Sections 4.9.5 and 5
SBO term 'SBO:0000336' on the <parameter> is not in the appropriate branch.
- The value of the 'sboTerm' attribute on a <parameter> is expected to be an SBO identifier (http://www.biomodels.net/SBO/) referring to a quantitative parameter defined in SBO (i.e., terms derived from SBO:0000002, "quantitative systems description parameter").
Reference: L2V4 Sections 4.9.5 and 5
SBO term 'SBO:0000336' on the <parameter> is not in the appropriate branch.
- The value of the 'sboTerm' attribute on a <parameter> is expected to be an SBO identifier (http://www.biomodels.net/SBO/) referring to a quantitative parameter defined in SBO (i.e., terms derived from SBO:0000002, "quantitative systems description parameter").
Reference: L2V4 Sections 4.9.5 and 5
SBO term 'SBO:0000393' on the <parameter> is not in the appropriate branch.
- The value of the 'sboTerm' attribute on a <parameter> is expected to be an SBO identifier (http://www.biomodels.net/SBO/) referring to a quantitative parameter defined in SBO (i.e., terms derived from SBO:0000002, "quantitative systems description parameter").
Reference: L2V4 Sections 4.9.5 and 5
SBO term 'SBO:0000393' on the <parameter> is not in the appropriate branch.
- The value of the 'sboTerm' attribute on a <parameter> is expected to be an SBO identifier (http://www.biomodels.net/SBO/) referring to a quantitative parameter defined in SBO (i.e., terms derived from SBO:0000002, "quantitative systems description parameter").
Reference: L2V4 Sections 4.9.5 and 5
SBO term 'SBO:0000393' on the <parameter> is not in the appropriate branch.
- The value of the 'sboTerm' attribute on a <parameter> is expected to be an SBO identifier (http://www.biomodels.net/SBO/) referring to a quantitative parameter defined in SBO (i.e., terms derived from SBO:0000002, "quantitative systems description parameter").
Reference: L2V4 Sections 4.9.5 and 5
SBO term 'SBO:0000393' on the <parameter> is not in the appropriate branch.
- The value of the 'sboTerm' attribute on a <parameter> is expected to be an SBO identifier (http://www.biomodels.net/SBO/) referring to a quantitative parameter defined in SBO (i.e., terms derived from SBO:0000002, "quantitative systems description parameter").
Reference: L2V4 Sections 4.9.5 and 5
SBO term 'SBO:0000393' on the <parameter> is not in the appropriate branch.
- The value of the 'sboTerm' attribute on a <parameter> is expected to be an SBO identifier (http://www.biomodels.net/SBO/) referring to a quantitative parameter defined in SBO (i.e., terms derived from SBO:0000002, "quantitative systems description parameter").
Reference: L2V4 Sections 4.9.5 and 5
SBO term 'SBO:0000393' on the <parameter> is not in the appropriate branch.
- The value of the 'sboTerm' attribute on a <parameter> is expected to be an SBO identifier (http://www.biomodels.net/SBO/) referring to a quantitative parameter defined in SBO (i.e., terms derived from SBO:0000002, "quantitative systems description parameter").
Reference: L2V4 Sections 4.9.5 and 5
SBO term 'SBO:0000393' on the <parameter> is not in the appropriate branch.
- In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression.
The units of the <assignmentRule> <math> expression 'kswe_prime * Swe1 + kswe_doubleprime * Swe1M + kswe_tripleprime * PSwe1' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.
- In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression.
The units of the <assignmentRule> <math> expression 'kmih_prime * Mih_ast + kmih_doubleprime * Mih' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.
- In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression.
The units of the <assignmentRule> <math> expression 'IEtot - IE' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.
- In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression.
The units of the <assignmentRule> <math> expression 'Cdh1tot - Cdh1' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.
- In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression.
The units of the <assignmentRule> <math> expression 'Mih1tot - Mih1a' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.
- In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression.
The units of the <assignmentRule> <math> expression 'Mcmtot - Mcm' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.
- In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression.
The units of the <assignmentRule> <math> expression 'SBFtot - SBF' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.
- In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression.
The units of the <kineticLaw> <math> expression 'kdiss * Trim' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.
- In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression.
The units of the <kineticLaw> <math> expression 'Trim * (kdsic_prime * Cln + kdsic_doubleprime * Clb + kdsic)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.
- In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression.
The units of the <kineticLaw> <math> expression 'Trim * (kdclb_doubleprime * Cdh1 + kdclb_tripleprime * Cdc20a + kdclb_prime)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.
- In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression.
The units of the <kineticLaw> <math> expression 'Trim * kswe' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.
- In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression.
The units of the <kineticLaw> <math> expression 'kass * Sic * Clb' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.
- In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression.
The units of the <kineticLaw> <math> expression 'PTrim * kmih' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.
- In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression.
The units of the <kineticLaw> <math> expression 'Clb * (kdclb_doubleprime * Cdh1 + kdclb_tripleprime * Cdc20a + kdclb_prime)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.
- In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression.
The units of the <kineticLaw> <math> expression 'kswe * Clb' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.
- In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression.
The units of the <kineticLaw> <math> expression 'ksclb * mass * Jm * (eps + Mcm) / (mass + Jm)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.
- In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression.
The units of the <kineticLaw> <math> expression 'kmih * PClb' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.
- In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression.
The units of the <kineticLaw> <math> expression 'SBF * (kisbf_prime + kisbf_doubleprime * Clb) / (jisbf + SBF)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.
- In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression.
The units of the <kineticLaw> <math> expression 'SBFin * (kasbf_prime * mass + kasbf_doubleprime * Cln) / (jasbf + SBFin)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.
- In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression.
The units of the <kineticLaw> <math> expression 'IE * kiie / (jiie + IE)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.
- In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression.
The units of the <kineticLaw> <math> expression 'kaie * IEin * Clb / (jaie + IEin)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.
- In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression.
The units of the <kineticLaw> <math> expression 'Cdc20a * kicdc20 / (jicdc20 + Cdc20a)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.
- In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression.
The units of the <kineticLaw> <math> expression 'kdcdc20 * Cdc20a' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.
- In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression.
The units of the <kineticLaw> <math> expression 'kacdc20 * Cdc20 * IE / (jacdc20 + Cdc20)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.
- In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression.
The units of the <kineticLaw> <math> expression 'Cdh1 * (kicdh * Clb + kicdh_prime * Cln) / (jicdh + Cdh1)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.
- In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression.
The units of the <kineticLaw> <math> expression 'Cdh1in * (Kacdh_prime + Kacdh_doubleprime * Cdc20a) / (jacdh + Cdh1in)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.
- In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression.
The units of the <kineticLaw> <math> expression 'khsl1 * BUD * Swe1' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.
- In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression.
The units of the <kineticLaw> <math> expression 'khsl1 * BUD * PSwe1' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.
- In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression.
The units of the <kineticLaw> <math> expression 'Viwee * Swe1 * Clb / (Jiwee + Swe1)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.
- In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression.
The units of the <kineticLaw> <math> expression 'Viwee * Swe1M * Clb / (Jiwee + Swe1M)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.
- In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression.
The units of the <kineticLaw> <math> expression 'kdswe_prime * Swe1' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.
- In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression.
The units of the <kineticLaw> <math> expression 'khsl1r * Swe1M' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.
- In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression.
The units of the <kineticLaw> <math> expression 'khsl1r * PSwe1M' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.
- In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression.
The units of the <kineticLaw> <math> expression 'PSwe1 * Vawee / (Jawee + PSwe1)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.
- In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression.
The units of the <kineticLaw> <math> expression 'PSwe1M * Vawee / (Jawee + PSwe1M)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.
- In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression.
The units of the <kineticLaw> <math> expression 'ksswe * SBF' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.
- In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression.
The units of the <kineticLaw> <math> expression 'kssweC' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.
- In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression.
The units of the <kineticLaw> <math> expression 'kdswe_prime * PSwe1' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.
- In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression.
The units of the <kineticLaw> <math> expression 'kdiss * PTrim' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.
- In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression.
The units of the <kineticLaw> <math> expression 'PTrim * (kdclb_doubleprime * Cdh1 + kdclb_tripleprime * Cdc20a + kdclb_prime)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.
- In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression.
The units of the <kineticLaw> <math> expression 'PTrim * (kdsic_prime * Cln + kdsic_doubleprime * Clb + kdsic)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.
- In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression.
The units of the <kineticLaw> <math> expression 'kass * PClb * Sic' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.
- In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression.
The units of the <kineticLaw> <math> expression 'Mih1a * Vimih / (jimih + Mih1a)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.
- In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression.
The units of the <kineticLaw> <math> expression 'Vamih * Mih1 * Clb / (Jamih + Mih1)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.
- In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression.
The units of the <kineticLaw> <math> expression 'Mcm * kimcm / (jimcm + Mcm)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.
- In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression.
The units of the <kineticLaw> <math> expression 'Mcmin * Clb * kamcm / (jamcm + Mcmin)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.
- In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression.
The units of the <kineticLaw> <math> expression 'kdbud * BE' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.
- In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression.
The units of the <kineticLaw> <math> expression 'ksbud * Cln' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.
- In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression.
The units of the <kineticLaw> <math> expression 'Sic * (kdsic_prime * Cln + kdsic_doubleprime * Clb + kdsic)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.
- In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression.
The units of the <kineticLaw> <math> expression 'kssic' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.
- In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression.
The units of the <kineticLaw> <math> expression 'kdcln * Cln' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.
- In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression.
The units of the <kineticLaw> <math> expression 'kscln * SBF' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.
- In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression.
The units of the <kineticLaw> <math> expression 'kdswe_prime * Swe1M' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.
- In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression.
The units of the <kineticLaw> <math> expression 'kdcdc20 * Cdc20' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.
- In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression.
The units of the <kineticLaw> <math> expression 'kscdc20_prime + kscdc20_doubleprime * pow(Clb, 4) / (pow(jscdc20, 4) + pow(Clb, 4))' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.
- In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression.
The units of the <kineticLaw> <math> expression 'kdswe_doubleprime * PSwe1M' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.
- In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression.
The units of the <kineticLaw> <math> expression 'PClb * (kdclb_doubleprime * Cdh1 + kdclb_tripleprime * Cdc20a + kdclb_prime)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.
- In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression.
The units of the <kineticLaw> <math> expression 'mu * mass' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.
- In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression.
The units of the <event> <trigger> expression 'gt(Clb, 0.2)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.
- In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression.
The units of the <eventAssignment> <math> expression '1' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.
- In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression.
The units of the <event> <trigger> expression 'and(lt(Clb, 0.2), gt(flag, 0))' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.
- In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression.
The units of the <eventAssignment> <math> expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.
- In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression.
The units of the <eventAssignment> <math> expression '0.5 * mass' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.
- In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression.
The units of the <event> <trigger> expression 'or(geq(Clb, 0.2), geq(BE, 0.6))' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.
- In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression.
The units of the <eventAssignment> <math> expression '1' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.
- In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression.
The units of the <event> <trigger> expression 'and(lt(Clb, 0.2), lt(BE, 0.6))' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.
- In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression.
The units of the <eventAssignment> <math> expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.
- As a principle of best modeling practice, the units of a <parameter> should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.
The <parameter> with the id 'kswe' does not have a 'units' attribute.
- As a principle of best modeling practice, the units of a <parameter> should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.
The <parameter> with the id 'kswe_prime' does not have a 'units' attribute.
- As a principle of best modeling practice, the units of a <parameter> should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.
The <parameter> with the id 'kswe_doubleprime' does not have a 'units' attribute.
- As a principle of best modeling practice, the units of a <parameter> should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.
The <parameter> with the id 'kswe_tripleprime' does not have a 'units' attribute.
- As a principle of best modeling practice, the units of a <parameter> should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.
The <parameter> with the id 'kmih' does not have a 'units' attribute.
- As a principle of best modeling practice, the units of a <parameter> should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.
The <parameter> with the id 'kmih_prime' does not have a 'units' attribute.
- As a principle of best modeling practice, the units of a <parameter> should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.
The <parameter> with the id 'Mih_ast' does not have a 'units' attribute.
- As a principle of best modeling practice, the units of a <parameter> should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.
The <parameter> with the id 'kmih_doubleprime' does not have a 'units' attribute.
- As a principle of best modeling practice, the units of a <parameter> should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.
The <parameter> with the id 'Mih' does not have a 'units' attribute.
- As a principle of best modeling practice, the units of a <parameter> should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.
The <parameter> with the id 'IEin' does not have a 'units' attribute.
- As a principle of best modeling practice, the units of a <parameter> should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.
The <parameter> with the id 'IEtot' does not have a 'units' attribute.
- As a principle of best modeling practice, the units of a <parameter> should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.
The <parameter> with the id 'Cdh1in' does not have a 'units' attribute.
- As a principle of best modeling practice, the units of a <parameter> should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.
The <parameter> with the id 'Cdh1tot' does not have a 'units' attribute.
- As a principle of best modeling practice, the units of a <parameter> should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.
The <parameter> with the id 'Mih1' does not have a 'units' attribute.
- As a principle of best modeling practice, the units of a <parameter> should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.
The <parameter> with the id 'Mih1tot' does not have a 'units' attribute.
- As a principle of best modeling practice, the units of a <parameter> should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.
The <parameter> with the id 'Mcmin' does not have a 'units' attribute.
- As a principle of best modeling practice, the units of a <parameter> should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.
The <parameter> with the id 'Mcmtot' does not have a 'units' attribute.
- As a principle of best modeling practice, the units of a <parameter> should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.
The <parameter> with the id 'SBFin' does not have a 'units' attribute.
- As a principle of best modeling practice, the units of a <parameter> should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.
The <parameter> with the id 'SBFtot' does not have a 'units' attribute.
- As a principle of best modeling practice, the units of a <parameter> should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.
The <parameter> with the id 'kdiss' does not have a 'units' attribute.
- As a principle of best modeling practice, the units of a <parameter> should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.
The <parameter> with the id 'kdsic_prime' does not have a 'units' attribute.
- As a principle of best modeling practice, the units of a <parameter> should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.
The <parameter> with the id 'kdsic_doubleprime' does not have a 'units' attribute.
- As a principle of best modeling practice, the units of a <parameter> should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.
The <parameter> with the id 'kdsic' does not have a 'units' attribute.
- As a principle of best modeling practice, the units of a <parameter> should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.
The <parameter> with the id 'kdclb_doubleprime' does not have a 'units' attribute.
- As a principle of best modeling practice, the units of a <parameter> should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.
The <parameter> with the id 'kdclb_tripleprime' does not have a 'units' attribute.
- As a principle of best modeling practice, the units of a <parameter> should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.
The <parameter> with the id 'kdclb_prime' does not have a 'units' attribute.
- As a principle of best modeling practice, the units of a <parameter> should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.
The <parameter> with the id 'kass' does not have a 'units' attribute.
- As a principle of best modeling practice, the units of a <parameter> should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.
The <parameter> with the id 'ksclb' does not have a 'units' attribute.
- As a principle of best modeling practice, the units of a <parameter> should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.
The <parameter> with the id 'Jm' does not have a 'units' attribute.
- As a principle of best modeling practice, the units of a <parameter> should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.
The <parameter> with the id 'eps' does not have a 'units' attribute.
- As a principle of best modeling practice, the units of a <parameter> should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.
The <parameter> with the id 'kisbf_prime' does not have a 'units' attribute.
- As a principle of best modeling practice, the units of a <parameter> should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.
The <parameter> with the id 'kisbf_doubleprime' does not have a 'units' attribute.
- As a principle of best modeling practice, the units of a <parameter> should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.
The <parameter> with the id 'jisbf' does not have a 'units' attribute.
- As a principle of best modeling practice, the units of a <parameter> should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.
The <parameter> with the id 'kasbf_prime' does not have a 'units' attribute.
- As a principle of best modeling practice, the units of a <parameter> should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.
The <parameter> with the id 'kasbf_doubleprime' does not have a 'units' attribute.
- As a principle of best modeling practice, the units of a <parameter> should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.
The <parameter> with the id 'jasbf' does not have a 'units' attribute.
- As a principle of best modeling practice, the units of a <parameter> should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.
The <parameter> with the id 'kiie' does not have a 'units' attribute.
- As a principle of best modeling practice, the units of a <parameter> should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.
The <parameter> with the id 'jiie' does not have a 'units' attribute.
- As a principle of best modeling practice, the units of a <parameter> should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.
The <parameter> with the id 'kaie' does not have a 'units' attribute.
- As a principle of best modeling practice, the units of a <parameter> should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.
The <parameter> with the id 'jaie' does not have a 'units' attribute.
- As a principle of best modeling practice, the units of a <parameter> should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.
The <parameter> with the id 'kicdc20' does not have a 'units' attribute.
- As a principle of best modeling practice, the units of a <parameter> should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.
The <parameter> with the id 'jicdc20' does not have a 'units' attribute.
- As a principle of best modeling practice, the units of a <parameter> should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.
The <parameter> with the id 'kdcdc20' does not have a 'units' attribute.
- As a principle of best modeling practice, the units of a <parameter> should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.
The <parameter> with the id 'kacdc20' does not have a 'units' attribute.
- As a principle of best modeling practice, the units of a <parameter> should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.
The <parameter> with the id 'jacdc20' does not have a 'units' attribute.
- As a principle of best modeling practice, the units of a <parameter> should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.
The <parameter> with the id 'kicdh' does not have a 'units' attribute.
- As a principle of best modeling practice, the units of a <parameter> should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.
The <parameter> with the id 'kicdh_prime' does not have a 'units' attribute.
- As a principle of best modeling practice, the units of a <parameter> should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.
The <parameter> with the id 'jicdh' does not have a 'units' attribute.
- As a principle of best modeling practice, the units of a <parameter> should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.
The <parameter> with the id 'Kacdh_prime' does not have a 'units' attribute.
- As a principle of best modeling practice, the units of a <parameter> should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.
The <parameter> with the id 'Kacdh_doubleprime' does not have a 'units' attribute.
- As a principle of best modeling practice, the units of a <parameter> should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.
The <parameter> with the id 'jacdh' does not have a 'units' attribute.
- As a principle of best modeling practice, the units of a <parameter> should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.
The <parameter> with the id 'khsl1' does not have a 'units' attribute.
- As a principle of best modeling practice, the units of a <parameter> should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.
The <parameter> with the id 'BUD' does not have a 'units' attribute.
- As a principle of best modeling practice, the units of a <parameter> should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.
The <parameter> with the id 'Viwee' does not have a 'units' attribute.
- As a principle of best modeling practice, the units of a <parameter> should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.
The <parameter> with the id 'Jiwee' does not have a 'units' attribute.
- As a principle of best modeling practice, the units of a <parameter> should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.
The <parameter> with the id 'kdswe_prime' does not have a 'units' attribute.
- As a principle of best modeling practice, the units of a <parameter> should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.
The <parameter> with the id 'khsl1r' does not have a 'units' attribute.
- As a principle of best modeling practice, the units of a <parameter> should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.
The <parameter> with the id 'Vawee' does not have a 'units' attribute.
- As a principle of best modeling practice, the units of a <parameter> should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.
The <parameter> with the id 'Jawee' does not have a 'units' attribute.
- As a principle of best modeling practice, the units of a <parameter> should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.
The <parameter> with the id 'ksswe' does not have a 'units' attribute.
- As a principle of best modeling practice, the units of a <parameter> should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.
The <parameter> with the id 'kssweC' does not have a 'units' attribute.
- As a principle of best modeling practice, the units of a <parameter> should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.
The <parameter> with the id 'Vimih' does not have a 'units' attribute.
- As a principle of best modeling practice, the units of a <parameter> should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.
The <parameter> with the id 'jimih' does not have a 'units' attribute.
- As a principle of best modeling practice, the units of a <parameter> should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.
The <parameter> with the id 'Vamih' does not have a 'units' attribute.
- As a principle of best modeling practice, the units of a <parameter> should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.
The <parameter> with the id 'Jamih' does not have a 'units' attribute.
- As a principle of best modeling practice, the units of a <parameter> should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.
The <parameter> with the id 'kimcm' does not have a 'units' attribute.
- As a principle of best modeling practice, the units of a <parameter> should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.
The <parameter> with the id 'jimcm' does not have a 'units' attribute.
- As a principle of best modeling practice, the units of a <parameter> should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.
The <parameter> with the id 'kamcm' does not have a 'units' attribute.
- As a principle of best modeling practice, the units of a <parameter> should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.
The <parameter> with the id 'jamcm' does not have a 'units' attribute.
- As a principle of best modeling practice, the units of a <parameter> should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.
The <parameter> with the id 'kdbud' does not have a 'units' attribute.
- As a principle of best modeling practice, the units of a < ...
published_project.SimulatorCanExecutePublishedProject:bngl/Dolan-PLoS-Comput-Biol-2015-NHEJ
(0.0 s)Required model formats and simulation algorithms for SED tasks:
Format: format_3972
Algorithm: KISAO_0000263
Reason for skip:
Case requires model formats format_3972 and simulation algorithms KISAO_0000263
Log:
published_project.SimulatorCanExecutePublishedProject:bngl/test-bngl
(0.0 s)Required model formats and simulation algorithms for SED tasks:
Format: format_3972
Algorithm: KISAO_0000019
Reason for skip:
Case requires model formats format_3972 and simulation algorithms KISAO_0000019
Log:
published_project.SimulatorCanExecutePublishedProject:cellml/Lorenz-system
(0.0 s)Required model formats and simulation algorithms for SED tasks:
Format: format_3240
Algorithm: KISAO_0000019
Reason for skip:
Case requires model formats format_3240 and simulation algorithms KISAO_0000019
Log:
published_project.SimulatorCanExecutePublishedProject:neuroml-lems/Hodgkin-Huxley-cell-CVODE
(0.0 s)Required model formats and simulation algorithms for SED tasks:
Format: format_9004
Algorithm: KISAO_0000019
Reason for skip:
Case requires model formats format_9004 and simulation algorithms KISAO_0000019
Log:
published_project.SimulatorCanExecutePublishedProject:neuroml-lems/Hodgkin-Huxley-cell-Euler
(0.0 s)Required model formats and simulation algorithms for SED tasks:
Format: format_9004
Algorithm: KISAO_0000030
Reason for skip:
Case requires model formats format_9004 and simulation algorithms KISAO_0000030
Log:
published_project.SimulatorCanExecutePublishedProject:sbml-core/Caravagna-J-Theor-Biol-2010-tumor-suppressive-oscillations
(0.0 s)Required model formats and simulation algorithms for SED tasks:
Format: format_2585
Algorithm: KISAO_0000019
Reason for skip:
Case requires model formats format_2585 and simulation algorithms KISAO_0000019
Log:
published_project.SimulatorCanExecutePublishedProject:sbml-core/Ciliberto-J-Cell-Biol-2003-morphogenesis-checkpoint-continuous
(0.0 s)Required model formats and simulation algorithms for SED tasks:
Format: format_2585
Algorithm: KISAO_0000019
Reason for skip:
Case requires model formats format_2585 and simulation algorithms KISAO_0000019
Log:
published_project.SimulatorCanExecutePublishedProject:sbml-core/Edelstein-Biol-Cybern-1996-Nicotinic-excitation
(0.0 s)Required model formats and simulation algorithms for SED tasks:
Format: format_2585
Algorithm: KISAO_0000088
Reason for skip:
Case requires model formats format_2585 and simulation algorithms KISAO_0000088
Log:
published_project.SimulatorCanExecutePublishedProject:sbml-core/Parmar-BMC-Syst-Biol-2017-iron-distribution
(0.0 s)Required model formats and simulation algorithms for SED tasks:
Format: format_2585
Algorithm: KISAO_000019
Reason for skip:
Case requires model formats format_2585 and simulation algorithms KISAO_000019
Log:
published_project.SimulatorCanExecutePublishedProject:sbml-core/Szymanska-J-Theor-Biol-2009-HSP-synthesis
(0.0 s)Required model formats and simulation algorithms for SED tasks:
Format: format_2585
Algorithm: KISAO_0000496
Reason for skip:
Case requires model formats format_2585 and simulation algorithms KISAO_0000496
Log:
published_project.SimulatorCanExecutePublishedProject:sbml-core/Tomida-EMBO-J-2003-NFAT-translocation
(0.0 s)Required model formats and simulation algorithms for SED tasks:
Format: format_2585
Algorithm: KISAO_0000560
Reason for skip:
Case requires model formats format_2585 and simulation algorithms KISAO_0000560
Log:
published_project.SimulatorCanExecutePublishedProject:sbml-core/Varusai-Sci-Rep-2018-mTOR-signaling-LSODA-LSODAR-SBML
(0.0 s)Required model formats and simulation algorithms for SED tasks:
Format: format_2585
Algorithm: KISAO_0000560
Reason for skip:
Case requires model formats format_2585 and simulation algorithms KISAO_0000560
Log:
published_project.SimulatorCanExecutePublishedProject:sbml-core/Vilar-PNAS-2002-minimal-circardian-clock
(0.0 s)Required model formats and simulation algorithms for SED tasks:
Format: format_2585
Algorithm: KISAO_0000019
Format: format_2585
Algorithm: KISAO_0000027
Format: format_2585
Algorithm: KISAO_0000030
Reason for skip:
Case requires model formats format_2585 and simulation algorithms KISAO_0000019, KISAO_0000027, KISAO_0000030
Log:
published_project.SimulatorCanExecutePublishedProject:sbml-core/Vilar-PNAS-2002-minimal-circardian-clock-continuous
(0.0 s)Required model formats and simulation algorithms for SED tasks:
Format: format_2585
Algorithm: KISAO_0000019
Format: format_2585
Algorithm: KISAO_0000030
Reason for skip:
Case requires model formats format_2585 and simulation algorithms KISAO_0000019, KISAO_0000030
Log:
published_project.SimulatorCanExecutePublishedProject:sbml-core/Vilar-PNAS-2002-minimal-circardian-clock-discrete-NRM
(0.0 s)Required model formats and simulation algorithms for SED tasks:
Format: format_2585
Algorithm: KISAO_0000027
Reason for skip:
Case requires model formats format_2585 and simulation algorithms KISAO_0000027
Log:
published_project.SimulatorCanExecutePublishedProject:sbml-core/Vilar-PNAS-2002-minimal-circardian-clock-discrete-SSA
(0.0 s)Required model formats and simulation algorithms for SED tasks:
Format: format_2585
Algorithm: KISAO_0000029
Reason for skip:
Case requires model formats format_2585 and simulation algorithms KISAO_0000029
Log:
published_project.SimulatorCanExecutePublishedProject:sbml-fbc/Escherichia-coli-core-metabolism
(0.0 s)Required model formats and simulation algorithms for SED tasks:
Format: format_2585
Algorithm: KISAO_0000437
Reason for skip:
Case requires model formats format_2585 and simulation algorithms KISAO_0000437
Log:
published_project.SimulatorCanExecutePublishedProject:sbml-qual/Chaouiya-BMC-Syst-Biol-2013-EGF-TNFa-signaling
(0.0 s)Required model formats and simulation algorithms for SED tasks:
Format: format_2585
Algorithm: KISAO_0000449
Reason for skip:
Case requires model formats format_2585 and simulation algorithms KISAO_0000449
Log:
published_project.SimulatorCanExecutePublishedProject:smoldyn/Lotka-Volterra
(0.0 s)Required model formats and simulation algorithms for SED tasks:
Format: format_9001
Algorithm: KISAO_0000057
Reason for skip:
Case requires model formats format_9001 and simulation algorithms KISAO_0000057
Log:
sedml.SimulatorProducesLinear3DPlots
(0.1 s)Test that a simulator produces linear 3D plots
Reason for skip:
No curated COMBINE/OMEX archives are available to generate archives for testing
Log:
sedml.SimulatorProducesLogarithmic3DPlots
(0.1 s)Test that a simulator produces logarithmic 3D plots
Reason for skip:
No curated COMBINE/OMEX archives are available to generate archives for testing
Log:
sedml.SimulatorSupportsAlgorithmParameters
(0.1 s)Test that a simulator supports setting the values of parameters of algorithms
Reason for skip:
No curated COMBINE/OMEX archives are available to generate archives for testing
Log:
sedml.SimulatorSupportsUniformTimeCoursesWithNonZeroInitialTimes
(4.4 s)Test that a simulator supports multiple time courses with non-zero initial times
Reason for skip:
The image 'ghcr.io/biosimulators/libsbmlsim/libsbmlsim:1.4.0' could not execute the archive:
Unknown error
Log:
/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: [33mThe SED document is potentially incorrect.
- Model `Ciliberto2003_Morphogenesis` may be invalid.
- The model file `BIOMD0000000297_url.xml` may be invalid.
- The value of the 'sboTerm' attribute on a <species> is expected to be an SBO identifier (http://www.biomodels.net/SBO/). In SBML Level 2 prior to Version 4 it is expected to refer to a participant physical type (i.e., terms derived from SBO:0000236, "participant physical type"); in Versions 4 and above it is expected to refer to a material entity (i.e., terms derived from SBO:0000240, "material entity").
Reference: L2V4 Section 5
SBO term 'SBO:0000014' on the <species> is not in the appropriate branch.
- The value of the 'sboTerm' attribute on a <species> is expected to be an SBO identifier (http://www.biomodels.net/SBO/). In SBML Level 2 prior to Version 4 it is expected to refer to a participant physical type (i.e., terms derived from SBO:0000236, "participant physical type"); in Versions 4 and above it is expected to refer to a material entity (i.e., terms derived from SBO:0000240, "material entity").
Reference: L2V4 Section 5
SBO term 'SBO:0000236' on the <species> is not in the appropriate branch.
- The value of the 'sboTerm' attribute on a <species> is expected to be an SBO identifier (http://www.biomodels.net/SBO/). In SBML Level 2 prior to Version 4 it is expected to refer to a participant physical type (i.e., terms derived from SBO:0000236, "participant physical type"); in Versions 4 and above it is expected to refer to a material entity (i.e., terms derived from SBO:0000240, "material entity").
Reference: L2V4 Section 5
SBO term 'SBO:0000236' on the <species> is not in the appropriate branch.
- The value of the 'sboTerm' attribute on a <parameter> is expected to be an SBO identifier (http://www.biomodels.net/SBO/) referring to a quantitative parameter defined in SBO (i.e., terms derived from SBO:0000002, "quantitative systems description parameter").
Reference: L2V4 Sections 4.9.5 and 5
SBO term 'SBO:0000336' on the <parameter> is not in the appropriate branch.
- The value of the 'sboTerm' attribute on a <parameter> is expected to be an SBO identifier (http://www.biomodels.net/SBO/) referring to a quantitative parameter defined in SBO (i.e., terms derived from SBO:0000002, "quantitative systems description parameter").
Reference: L2V4 Sections 4.9.5 and 5
SBO term 'SBO:0000336' on the <parameter> is not in the appropriate branch.
- The value of the 'sboTerm' attribute on a <parameter> is expected to be an SBO identifier (http://www.biomodels.net/SBO/) referring to a quantitative parameter defined in SBO (i.e., terms derived from SBO:0000002, "quantitative systems description parameter").
Reference: L2V4 Sections 4.9.5 and 5
SBO term 'SBO:0000393' on the <parameter> is not in the appropriate branch.
- The value of the 'sboTerm' attribute on a <parameter> is expected to be an SBO identifier (http://www.biomodels.net/SBO/) referring to a quantitative parameter defined in SBO (i.e., terms derived from SBO:0000002, "quantitative systems description parameter").
Reference: L2V4 Sections 4.9.5 and 5
SBO term 'SBO:0000393' on the <parameter> is not in the appropriate branch.
- The value of the 'sboTerm' attribute on a <parameter> is expected to be an SBO identifier (http://www.biomodels.net/SBO/) referring to a quantitative parameter defined in SBO (i.e., terms derived from SBO:0000002, "quantitative systems description parameter").
Reference: L2V4 Sections 4.9.5 and 5
SBO term 'SBO:0000393' on the <parameter> is not in the appropriate branch.
- The value of the 'sboTerm' attribute on a <parameter> is expected to be an SBO identifier (http://www.biomodels.net/SBO/) referring to a quantitative parameter defined in SBO (i.e., terms derived from SBO:0000002, "quantitative systems description parameter").
Reference: L2V4 Sections 4.9.5 and 5
SBO term 'SBO:0000393' on the <parameter> is not in the appropriate branch.
- The value of the 'sboTerm' attribute on a <parameter> is expected to be an SBO identifier (http://www.biomodels.net/SBO/) referring to a quantitative parameter defined in SBO (i.e., terms derived from SBO:0000002, "quantitative systems description parameter").
Reference: L2V4 Sections 4.9.5 and 5
SBO term 'SBO:0000393' on the <parameter> is not in the appropriate branch.
- The value of the 'sboTerm' attribute on a <parameter> is expected to be an SBO identifier (http://www.biomodels.net/SBO/) referring to a quantitative parameter defined in SBO (i.e., terms derived from SBO:0000002, "quantitative systems description parameter").
Reference: L2V4 Sections 4.9.5 and 5
SBO term 'SBO:0000393' on the <parameter> is not in the appropriate branch.
- The value of the 'sboTerm' attribute on a <parameter> is expected to be an SBO identifier (http://www.biomodels.net/SBO/) referring to a quantitative parameter defined in SBO (i.e., terms derived from SBO:0000002, "quantitative systems description parameter").
Reference: L2V4 Sections 4.9.5 and 5
SBO term 'SBO:0000393' on the <parameter> is not in the appropriate branch.
- In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression.
The units of the <assignmentRule> <math> expression 'kswe_prime * Swe1 + kswe_doubleprime * Swe1M + kswe_tripleprime * PSwe1' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.
- In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression.
The units of the <assignmentRule> <math> expression 'kmih_prime * Mih_ast + kmih_doubleprime * Mih' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.
- In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression.
The units of the <assignmentRule> <math> expression 'IEtot - IE' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.
- In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression.
The units of the <assignmentRule> <math> expression 'Cdh1tot - Cdh1' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.
- In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression.
The units of the <assignmentRule> <math> expression 'Mih1tot - Mih1a' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.
- In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression.
The units of the <assignmentRule> <math> expression 'Mcmtot - Mcm' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.
- In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression.
The units of the <assignmentRule> <math> expression 'SBFtot - SBF' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.
- In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression.
The units of the <kineticLaw> <math> expression 'kdiss * Trim' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.
- In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression.
The units of the <kineticLaw> <math> expression 'Trim * (kdsic_prime * Cln + kdsic_doubleprime * Clb + kdsic)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.
- In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression.
The units of the <kineticLaw> <math> expression 'Trim * (kdclb_doubleprime * Cdh1 + kdclb_tripleprime * Cdc20a + kdclb_prime)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.
- In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression.
The units of the <kineticLaw> <math> expression 'Trim * kswe' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.
- In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression.
The units of the <kineticLaw> <math> expression 'kass * Sic * Clb' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.
- In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression.
The units of the <kineticLaw> <math> expression 'PTrim * kmih' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.
- In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression.
The units of the <kineticLaw> <math> expression 'Clb * (kdclb_doubleprime * Cdh1 + kdclb_tripleprime * Cdc20a + kdclb_prime)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.
- In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression.
The units of the <kineticLaw> <math> expression 'kswe * Clb' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.
- In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression.
The units of the <kineticLaw> <math> expression 'ksclb * mass * Jm * (eps + Mcm) / (mass + Jm)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.
- In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression.
The units of the <kineticLaw> <math> expression 'kmih * PClb' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.
- In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression.
The units of the <kineticLaw> <math> expression 'SBF * (kisbf_prime + kisbf_doubleprime * Clb) / (jisbf + SBF)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.
- In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression.
The units of the <kineticLaw> <math> expression 'SBFin * (kasbf_prime * mass + kasbf_doubleprime * Cln) / (jasbf + SBFin)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.
- In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression.
The units of the <kineticLaw> <math> expression 'IE * kiie / (jiie + IE)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.
- In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression.
The units of the <kineticLaw> <math> expression 'kaie * IEin * Clb / (jaie + IEin)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.
- In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression.
The units of the <kineticLaw> <math> expression 'Cdc20a * kicdc20 / (jicdc20 + Cdc20a)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.
- In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression.
The units of the <kineticLaw> <math> expression 'kdcdc20 * Cdc20a' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.
- In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression.
The units of the <kineticLaw> <math> expression 'kacdc20 * Cdc20 * IE / (jacdc20 + Cdc20)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.
- In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression.
The units of the <kineticLaw> <math> expression 'Cdh1 * (kicdh * Clb + kicdh_prime * Cln) / (jicdh + Cdh1)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.
- In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression.
The units of the <kineticLaw> <math> expression 'Cdh1in * (Kacdh_prime + Kacdh_doubleprime * Cdc20a) / (jacdh + Cdh1in)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.
- In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression.
The units of the <kineticLaw> <math> expression 'khsl1 * BUD * Swe1' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.
- In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression.
The units of the <kineticLaw> <math> expression 'khsl1 * BUD * PSwe1' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.
- In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression.
The units of the <kineticLaw> <math> expression 'Viwee * Swe1 * Clb / (Jiwee + Swe1)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.
- In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression.
The units of the <kineticLaw> <math> expression 'Viwee * Swe1M * Clb / (Jiwee + Swe1M)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.
- In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression.
The units of the <kineticLaw> <math> expression 'kdswe_prime * Swe1' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.
- In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression.
The units of the <kineticLaw> <math> expression 'khsl1r * Swe1M' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.
- In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression.
The units of the <kineticLaw> <math> expression 'khsl1r * PSwe1M' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.
- In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression.
The units of the <kineticLaw> <math> expression 'PSwe1 * Vawee / (Jawee + PSwe1)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.
- In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression.
The units of the <kineticLaw> <math> expression 'PSwe1M * Vawee / (Jawee + PSwe1M)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.
- In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression.
The units of the <kineticLaw> <math> expression 'ksswe * SBF' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.
- In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression.
The units of the <kineticLaw> <math> expression 'kssweC' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.
- In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression.
The units of the <kineticLaw> <math> expression 'kdswe_prime * PSwe1' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.
- In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression.
The units of the <kineticLaw> <math> expression 'kdiss * PTrim' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.
- In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression.
The units of the <kineticLaw> <math> expression 'PTrim * (kdclb_doubleprime * Cdh1 + kdclb_tripleprime * Cdc20a + kdclb_prime)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.
- In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression.
The units of the <kineticLaw> <math> expression 'PTrim * (kdsic_prime * Cln + kdsic_doubleprime * Clb + kdsic)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.
- In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression.
The units of the <kineticLaw> <math> expression 'kass * PClb * Sic' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.
- In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression.
The units of the <kineticLaw> <math> expression 'Mih1a * Vimih / (jimih + Mih1a)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.
- In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression.
The units of the <kineticLaw> <math> expression 'Vamih * Mih1 * Clb / (Jamih + Mih1)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.
- In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression.
The units of the <kineticLaw> <math> expression 'Mcm * kimcm / (jimcm + Mcm)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.
- In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression.
The units of the <kineticLaw> <math> expression 'Mcmin * Clb * kamcm / (jamcm + Mcmin)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.
- In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression.
The units of the <kineticLaw> <math> expression 'kdbud * BE' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.
- In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression.
The units of the <kineticLaw> <math> expression 'ksbud * Cln' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.
- In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression.
The units of the <kineticLaw> <math> expression 'Sic * (kdsic_prime * Cln + kdsic_doubleprime * Clb + kdsic)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.
- In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression.
The units of the <kineticLaw> <math> expression 'kssic' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.
- In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression.
The units of the <kineticLaw> <math> expression 'kdcln * Cln' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.
- In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression.
The units of the <kineticLaw> <math> expression 'kscln * SBF' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.
- In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression.
The units of the <kineticLaw> <math> expression 'kdswe_prime * Swe1M' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.
- In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression.
The units of the <kineticLaw> <math> expression 'kdcdc20 * Cdc20' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.
- In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression.
The units of the <kineticLaw> <math> expression 'kscdc20_prime + kscdc20_doubleprime * pow(Clb, 4) / (pow(jscdc20, 4) + pow(Clb, 4))' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.
- In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression.
The units of the <kineticLaw> <math> expression 'kdswe_doubleprime * PSwe1M' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.
- In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression.
The units of the <kineticLaw> <math> expression 'PClb * (kdclb_doubleprime * Cdh1 + kdclb_tripleprime * Cdc20a + kdclb_prime)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.
- In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression.
The units of the <kineticLaw> <math> expression 'mu * mass' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.
- In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression.
The units of the <event> <trigger> expression 'gt(Clb, 0.2)' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.
- In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression.
The units of the <eventAssignment> <math> expression '1' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.
- In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression.
The units of the <event> <trigger> expression 'and(lt(Clb, 0.2), gt(flag, 0))' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.
- In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression.
The units of the <eventAssignment> <math> expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.
- In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression.
The units of the <eventAssignment> <math> expression '0.5 * mass' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.
- In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression.
The units of the <event> <trigger> expression 'or(geq(Clb, 0.2), geq(BE, 0.6))' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.
- In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression.
The units of the <eventAssignment> <math> expression '1' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.
- In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression.
The units of the <event> <trigger> expression 'and(lt(Clb, 0.2), lt(BE, 0.6))' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.
- In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression.
The units of the <eventAssignment> <math> expression '0' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.
- As a principle of best modeling practice, the units of a <parameter> should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.
The <parameter> with the id 'kswe' does not have a 'units' attribute.
- As a principle of best modeling practice, the units of a <parameter> should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.
The <parameter> with the id 'kswe_prime' does not have a 'units' attribute.
- As a principle of best modeling practice, the units of a <parameter> should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.
The <parameter> with the id 'kswe_doubleprime' does not have a 'units' attribute.
- As a principle of best modeling practice, the units of a <parameter> should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.
The <parameter> with the id 'kswe_tripleprime' does not have a 'units' attribute.
- As a principle of best modeling practice, the units of a <parameter> should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.
The <parameter> with the id 'kmih' does not have a 'units' attribute.
- As a principle of best modeling practice, the units of a <parameter> should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.
The <parameter> with the id 'kmih_prime' does not have a 'units' attribute.
- As a principle of best modeling practice, the units of a <parameter> should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.
The <parameter> with the id 'Mih_ast' does not have a 'units' attribute.
- As a principle of best modeling practice, the units of a <parameter> should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.
The <parameter> with the id 'kmih_doubleprime' does not have a 'units' attribute.
- As a principle of best modeling practice, the units of a <parameter> should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.
The <parameter> with the id 'Mih' does not have a 'units' attribute.
- As a principle of best modeling practice, the units of a <parameter> should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.
The <parameter> with the id 'IEin' does not have a 'units' attribute.
- As a principle of best modeling practice, the units of a <parameter> should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.
The <parameter> with the id 'IEtot' does not have a 'units' attribute.
- As a principle of best modeling practice, the units of a <parameter> should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.
The <parameter> with the id 'Cdh1in' does not have a 'units' attribute.
- As a principle of best modeling practice, the units of a <parameter> should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.
The <parameter> with the id 'Cdh1tot' does not have a 'units' attribute.
- As a principle of best modeling practice, the units of a <parameter> should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.
The <parameter> with the id 'Mih1' does not have a 'units' attribute.
- As a principle of best modeling practice, the units of a <parameter> should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.
The <parameter> with the id 'Mih1tot' does not have a 'units' attribute.
- As a principle of best modeling practice, the units of a <parameter> should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.
The <parameter> with the id 'Mcmin' does not have a 'units' attribute.
- As a principle of best modeling practice, the units of a <parameter> should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.
The <parameter> with the id 'Mcmtot' does not have a 'units' attribute.
- As a principle of best modeling practice, the units of a <parameter> should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.
The <parameter> with the id 'SBFin' does not have a 'units' attribute.
- As a principle of best modeling practice, the units of a <parameter> should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.
The <parameter> with the id 'SBFtot' does not have a 'units' attribute.
- As a principle of best modeling practice, the units of a <parameter> should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.
The <parameter> with the id 'kdiss' does not have a 'units' attribute.
- As a principle of best modeling practice, the units of a <parameter> should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.
The <parameter> with the id 'kdsic_prime' does not have a 'units' attribute.
- As a principle of best modeling practice, the units of a <parameter> should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.
The <parameter> with the id 'kdsic_doubleprime' does not have a 'units' attribute.
- As a principle of best modeling practice, the units of a <parameter> should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.
The <parameter> with the id 'kdsic' does not have a 'units' attribute.
- As a principle of best modeling practice, the units of a <parameter> should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.
The <parameter> with the id 'kdclb_doubleprime' does not have a 'units' attribute.
- As a principle of best modeling practice, the units of a <parameter> should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.
The <parameter> with the id 'kdclb_tripleprime' does not have a 'units' attribute.
- As a principle of best modeling practice, the units of a <parameter> should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.
The <parameter> with the id 'kdclb_prime' does not have a 'units' attribute.
- As a principle of best modeling practice, the units of a <parameter> should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.
The <parameter> with the id 'kass' does not have a 'units' attribute.
- As a principle of best modeling practice, the units of a <parameter> should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.
The <parameter> with the id 'ksclb' does not have a 'units' attribute.
- As a principle of best modeling practice, the units of a <parameter> should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.
The <parameter> with the id 'Jm' does not have a 'units' attribute.
- As a principle of best modeling practice, the units of a <parameter> should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.
The <parameter> with the id 'eps' does not have a 'units' attribute.
- As a principle of best modeling practice, the units of a <parameter> should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.
The <parameter> with the id 'kisbf_prime' does not have a 'units' attribute.
- As a principle of best modeling practice, the units of a <parameter> should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.
The <parameter> with the id 'kisbf_doubleprime' does not have a 'units' attribute.
- As a principle of best modeling practice, the units of a <parameter> should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.
The <parameter> with the id 'jisbf' does not have a 'units' attribute.
- As a principle of best modeling practice, the units of a <parameter> should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.
The <parameter> with the id 'kasbf_prime' does not have a 'units' attribute.
- As a principle of best modeling practice, the units of a <parameter> should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.
The <parameter> with the id 'kasbf_doubleprime' does not have a 'units' attribute.
- As a principle of best modeling practice, the units of a <parameter> should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.
The <parameter> with the id 'jasbf' does not have a 'units' attribute.
- As a principle of best modeling practice, the units of a <parameter> should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.
The <parameter> with the id 'kiie' does not have a 'units' attribute.
- As a principle of best modeling practice, the units of a <parameter> should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.
The <parameter> with the id 'jiie' does not have a 'units' attribute.
- As a principle of best modeling practice, the units of a <parameter> should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.
The <parameter> with the id 'kaie' does not have a 'units' attribute.
- As a principle of best modeling practice, the units of a <parameter> should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.
The <parameter> with the id 'jaie ...
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id: libsbmlsim version: 1.4.0 specificationsUrl: https://raw.githubusercontent.com/biosimulators/libsbmlsim/08e124afca6f1378faa27b4caaf8f89c24ffaa1d/biosimulators.json specificationsPatch: version: 1.4.0 image: url: ghcr.io/biosimulators/libsbmlsim/libsbmlsim:1.4.0 validateImage: true commitSimulator: true
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