search

biosimulators / Biosimulators

Registry of containerized biosimulation tools that support a standard command-line interface
https://biosimulators.org
MIT License
13 stars 0 forks source link

Submit MASSpy 0.1.2 #326

Closed biosimulators-daemon closed 3 years ago

biosimulators-daemon commented 3 years ago

id: masspy version: "0.1.2" specificationsUrl: https://raw.githubusercontent.com/biosimulators/Biosimulators_MASSpy/3f6437e189f62c98c026aa3ab59ab6a47f4b6f0c/biosimulators.json specificationsPatch: version: "0.1.2" image: url: ghcr.io/biosimulators/biosimulators_masspy/masspy:0.1.2 validateImage: true commitSimulator: true

biosimulators-daemon commented 3 years ago

Thank you @biosimulators-daemon for your submission to the BioSimulators simulator validation/submission system!

The BioSimulators validator bot is validating the specifications of your simulator, validating your Docker image, and committing your simulator to the BioSimulators registry.

We will discuss any concerns with your submission in this issue.

A complete log of your simulator submission job will be available for 90 days here. The results of the validation of your tool will also be saved as a JSON file. A link to this file will be available for 90 days from the "Artifacts" section at the bottom of this page.

biosimulators-daemon commented 3 years ago

The validation/submission of your simulator failed.

- The simulator specifications from `https://raw.githubusercontent.com/biosimulators/Biosimulators_MASSpy/3f6437e189f62c98c026aa3ab59ab6a47f4b6f0c/biosimulators.json` are invalid. The specifications of simulation tools must adhere to BioSimulators' schema. BioSimulators' schema is available in both JSON Schema and Open API Specifications formats. Documentation is available at https://api.biosimulators.org/.
- 
-   - ValidatorError (400): `/algorithms/0/parameters/8/kisaoId/id` is invalid
-     
-       KISAO_0000671 is not an id of a KiSAO term
- 
-   - ValidatorError (400): `/algorithms/0/parameters/9/kisaoId/id` is invalid
-     
-       KISAO_0000670 is not an id of a KiSAO term

The complete log of your validation/submission job, including further information about the failure, is available for 90 days here.

If you chose to validate your Docker image, the results of the validation of your image will be available shortly as a JSON file. A link to this file will be available for 90 days from the "Artifacts" section at the bottom of this page.

Once you have fixed the problem, edit the first block of this issue to re-initiate this validation.

The BioSimulators Team is happy to help. Questions and feedback can be directed to the BioSimulators Team by posting comments to this issues that reference the GitHub team @biosimulators/biosimulators (without the backticks).

biosimulators-daemon commented 3 years ago

Thank you @biosimulators-daemon for your submission to the BioSimulators simulator validation/submission system!

The BioSimulators validator bot is validating the specifications of your simulator, validating your Docker image, and committing your simulator to the BioSimulators registry.

We will discuss any concerns with your submission in this issue.

A complete log of your simulator submission job will be available for 90 days here. The results of the validation of your tool will also be saved as a JSON file. A link to this file will be available for 90 days from the "Artifacts" section at the bottom of this page.

biosimulators-daemon commented 3 years ago

The specifications of your simulator is valid!

biosimulators-daemon commented 3 years ago

Summary of tests

biosimulators-daemon commented 3 years ago

Failures

combine_archive.CombineArchiveHasSedDocumentsInNestedDirectories (20.6 s)

Test that SED documents in nested directories can be executed

Exception:

  The image 'ghcr.io/biosimulators/biosimulators_masspy/masspy:0.1.2' could not execute the archive:

    Unknown error

Log:


  /usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31 BioSimulatorsWarning: The SED document is potentially incorrect.

    - Model `model` may be invalid.

      - The model file `WholeCellRBC_MA_Rates.xml` may be invalid.

        - In situations where a mathematical expression refers to time, the units of time should be consistent with the global time units of the model. In models where the 'timeUnits' attribute has not been declared, libSBML does not yet have the functionality to verify accurately the consistency of the units in such expressions. 

        - In situations where a mathematical expression refers to extent, the units of extent should be consistent with the global extent units of the model. In models where the 'extentUnits' attribute has not been declared, libSBML does not yet have the functionality to verify accurately the consistency of the units in such expressions. 

        - In situations where a mathematical expression refers to a compartment, species or parameter, it is necessary to know the units of the object to establish unit consistency. In models where the units of an object have not been declared, libSBML does not yet have the functionality to accurately verify the consistency of the units in mathematical expressions referring to that object. 

           The units of the <compartment> 'c' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.

        - If the attribute 'units' on a Compartment object having a 'spatialDimensions' attribute value of '3' has not been set, then the unit of measurement associated with the compartment's size is determined by the value of the enclosing Model object's 'volumeUnits' attribute. If neither the Compartment object's 'units' nor the enclosing Model object's 'volumeUnits' attributes are set, the unit of compartment size is undefined.

          Reference: L3V1 Section 4.5.4

        - In situations where a mathematical expression refers to a compartment, species or parameter, it is necessary to know the units of the object to establish unit consistency. In models where the units of an object have not been declared, libSBML does not yet have the functionality to accurately verify the consistency of the units in mathematical expressions referring to that object. 

           The units of the <compartment> 'e' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.

        - If the attribute 'units' on a Compartment object having a 'spatialDimensions' attribute value of '3' has not been set, then the unit of measurement associated with the compartment's size is determined by the value of the enclosing Model object's 'volumeUnits' attribute. If neither the Compartment object's 'units' nor the enclosing Model object's 'volumeUnits' attributes are set, the unit of compartment size is undefined.

          Reference: L3V1 Section 4.5.4

        - In situations where a mathematical expression refers to a compartment, species or parameter, it is necessary to know the units of the object to establish unit consistency. In models where the units of an object have not been declared, libSBML does not yet have the functionality to accurately verify the consistency of the units in mathematical expressions referring to that object. 

           The units of the <species> 'M__13dpg_c' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.

        - If the attribute 'substanceUnits' in a Species object has not been set, then the unit of measurement associated with the species' quantity is determined by the value of the enclosing Model object's 'substanceUnits' attribute. If neither the Species object's 'substanceUnits' attribute nor the enclosing Model object's 'substanceUnits' attribute are set, then the unit of that species' quantity is undefined.

          Reference: L3V1 Section 4.6.5

           The <species> with id 'M__13dpg_c' does not have a substanceUnits attribute, nor does its enclosing <model>.

        - In situations where a mathematical expression refers to a compartment, species or parameter, it is necessary to know the units of the object to establish unit consistency. In models where the units of an object have not been declared, libSBML does not yet have the functionality to accurately verify the consistency of the units in mathematical expressions referring to that object. 

           The units of the <species> 'M__23dpg_c' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.

        - If the attribute 'substanceUnits' in a Species object has not been set, then the unit of measurement associated with the species' quantity is determined by the value of the enclosing Model object's 'substanceUnits' attribute. If neither the Species object's 'substanceUnits' attribute nor the enclosing Model object's 'substanceUnits' attribute are set, then the unit of that species' quantity is undefined.

          Reference: L3V1 Section 4.6.5

           The <species> with id 'M__23dpg_c' does not have a substanceUnits attribute, nor does its enclosing <model>.

        - In situations where a mathematical expression refers to a compartment, species or parameter, it is necessary to know the units of the object to establish unit consistency. In models where the units of an object have not been declared, libSBML does not yet have the functionality to accurately verify the consistency of the units in mathematical expressions referring to that object. 

           The units of the <species> 'M__2kmb_c' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.

        - If the attribute 'substanceUnits' in a Species object has not been set, then the unit of measurement associated with the species' quantity is determined by the value of the enclosing Model object's 'substanceUnits' attribute. If neither the Species object's 'substanceUnits' attribute nor the enclosing Model object's 'substanceUnits' attribute are set, then the unit of that species' quantity is undefined.

          Reference: L3V1 Section 4.6.5

           The <species> with id 'M__2kmb_c' does not have a substanceUnits attribute, nor does its enclosing <model>.

        - In situations where a mathematical expression refers to a compartment, species or parameter, it is necessary to know the units of the object to establish unit consistency. In models where the units of an object have not been declared, libSBML does not yet have the functionality to accurately verify the consistency of the units in mathematical expressions referring to that object. 

           The units of the <species> 'M__2pg_c' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.

        - If the attribute 'substanceUnits' in a Species object has not been set, then the unit of measurement associated with the species' quantity is determined by the value of the enclosing Model object's 'substanceUnits' attribute. If neither the Species object's 'substanceUnits' attribute nor the enclosing Model object's 'substanceUnits' attribute are set, then the unit of that species' quantity is undefined.

          Reference: L3V1 Section 4.6.5

           The <species> with id 'M__2pg_c' does not have a substanceUnits attribute, nor does its enclosing <model>.

        - In situations where a mathematical expression refers to a compartment, species or parameter, it is necessary to know the units of the object to establish unit consistency. In models where the units of an object have not been declared, libSBML does not yet have the functionality to accurately verify the consistency of the units in mathematical expressions referring to that object. 

           The units of the <species> 'M__35cgmp_c' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.

        - If the attribute 'substanceUnits' in a Species object has not been set, then the unit of measurement associated with the species' quantity is determined by the value of the enclosing Model object's 'substanceUnits' attribute. If neither the Species object's 'substanceUnits' attribute nor the enclosing Model object's 'substanceUnits' attribute are set, then the unit of that species' quantity is undefined.

          Reference: L3V1 Section 4.6.5

           The <species> with id 'M__35cgmp_c' does not have a substanceUnits attribute, nor does its enclosing <model>.

        - In situations where a mathematical expression refers to a compartment, species or parameter, it is necessary to know the units of the object to establish unit consistency. In models where the units of an object have not been declared, libSBML does not yet have the functionality to accurately verify the consistency of the units in mathematical expressions referring to that object. 

           The units of the <species> 'M__35cgmp_e' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.

        - If the attribute 'substanceUnits' in a Species object has not been set, then the unit of measurement associated with the species' quantity is determined by the value of the enclosing Model object's 'substanceUnits' attribute. If neither the Species object's 'substanceUnits' attribute nor the enclosing Model object's 'substanceUnits' attribute are set, then the unit of that species' quantity is undefined.

          Reference: L3V1 Section 4.6.5

           The <species> with id 'M__35cgmp_e' does not have a substanceUnits attribute, nor does its enclosing <model>.

        - In situations where a mathematical expression refers to a compartment, species or parameter, it is necessary to know the units of the object to establish unit consistency. In models where the units of an object have not been declared, libSBML does not yet have the functionality to accurately verify the consistency of the units in mathematical expressions referring to that object. 

           The units of the <species> 'M__3pg_c' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.

        - If the attribute 'substanceUnits' in a Species object has not been set, then the unit of measurement associated with the species' quantity is determined by the value of the enclosing Model object's 'substanceUnits' attribute. If neither the Species object's 'substanceUnits' attribute nor the enclosing Model object's 'substanceUnits' attribute are set, then the unit of that species' quantity is undefined.

          Reference: L3V1 Section 4.6.5

           The <species> with id 'M__3pg_c' does not have a substanceUnits attribute, nor does its enclosing <model>.

        - In situations where a mathematical expression refers to a compartment, species or parameter, it is necessary to know the units of the object to establish unit consistency. In models where the units of an object have not been declared, libSBML does not yet have the functionality to accurately verify the consistency of the units in mathematical expressions referring to that object. 

           The units of the <species> 'M__5mdr1p_c' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.

        - If the attribute 'substanceUnits' in a Species object has not been set, then the unit of measurement associated with the species' quantity is determined by the value of the enclosing Model object's 'substanceUnits' attribute. If neither the Species object's 'substanceUnits' attribute nor the enclosing Model object's 'substanceUnits' attribute are set, then the unit of that species' quantity is undefined.

          Reference: L3V1 Section 4.6.5

           The <species> with id 'M__5mdr1p_c' does not have a substanceUnits attribute, nor does its enclosing <model>.

        - In situations where a mathematical expression refers to a compartment, species or parameter, it is necessary to know the units of the object to establish unit consistency. In models where the units of an object have not been declared, libSBML does not yet have the functionality to accurately verify the consistency of the units in mathematical expressions referring to that object. 

           The units of the <species> 'M__5mdru1p_c' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.

        - If the attribute 'substanceUnits' in a Species object has not been set, then the unit of measurement associated with the species' quantity is determined by the value of the enclosing Model object's 'substanceUnits' attribute. If neither the Species object's 'substanceUnits' attribute nor the enclosing Model object's 'substanceUnits' attribute are set, then the unit of that species' quantity is undefined.

          Reference: L3V1 Section 4.6.5

           The <species> with id 'M__5mdru1p_c' does not have a substanceUnits attribute, nor does its enclosing <model>.

        - In situations where a mathematical expression refers to a compartment, species or parameter, it is necessary to know the units of the object to establish unit consistency. In models where the units of an object have not been declared, libSBML does not yet have the functionality to accurately verify the consistency of the units in mathematical expressions referring to that object. 

           The units of the <species> 'M__5mta_c' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.

        - If the attribute 'substanceUnits' in a Species object has not been set, then the unit of measurement associated with the species' quantity is determined by the value of the enclosing Model object's 'substanceUnits' attribute. If neither the Species object's 'substanceUnits' attribute nor the enclosing Model object's 'substanceUnits' attribute are set, then the unit of that species' quantity is undefined.

          Reference: L3V1 Section 4.6.5

           The <species> with id 'M__5mta_c' does not have a substanceUnits attribute, nor does its enclosing <model>.

        - In situations where a mathematical expression refers to a compartment, species or parameter, it is necessary to know the units of the object to establish unit consistency. In models where the units of an object have not been declared, libSBML does not yet have the functionality to accurately verify the consistency of the units in mathematical expressions referring to that object. 

           The units of the <species> 'M__5oxpro_c' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.

        - If the attribute 'substanceUnits' in a Species object has not been set, then the unit of measurement associated with the species' quantity is determined by the value of the enclosing Model object's 'substanceUnits' attribute. If neither the Species object's 'substanceUnits' attribute nor the enclosing Model object's 'substanceUnits' attribute are set, then the unit of that species' quantity is undefined.

          Reference: L3V1 Section 4.6.5

           The <species> with id 'M__5oxpro_c' does not have a substanceUnits attribute, nor does its enclosing <model>.

        - In situations where a mathematical expression refers to a compartment, species or parameter, it is necessary to know the units of the object to establish unit consistency. In models where the units of an object have not been declared, libSBML does not yet have the functionality to accurately verify the consistency of the units in mathematical expressions referring to that object. 

           The units of the <species> 'M__5oxpro_e' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.

        - If the attribute 'substanceUnits' in a Species object has not been set, then the unit of measurement associated with the species' quantity is determined by the value of the enclosing Model object's 'substanceUnits' attribute. If neither the Species object's 'substanceUnits' attribute nor the enclosing Model object's 'substanceUnits' attribute are set, then the unit of that species' quantity is undefined.

          Reference: L3V1 Section 4.6.5

           The <species> with id 'M__5oxpro_e' does not have a substanceUnits attribute, nor does its enclosing <model>.

        - In situations where a mathematical expression refers to a compartment, species or parameter, it is necessary to know the units of the object to establish unit consistency. In models where the units of an object have not been declared, libSBML does not yet have the functionality to accurately verify the consistency of the units in mathematical expressions referring to that object. 

           The units of the <species> 'M__6pgc_c' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.

        - If the attribute 'substanceUnits' in a Species object has not been set, then the unit of measurement associated with the species' quantity is determined by the value of the enclosing Model object's 'substanceUnits' attribute. If neither the Species object's 'substanceUnits' attribute nor the enclosing Model object's 'substanceUnits' attribute are set, then the unit of that species' quantity is undefined.

          Reference: L3V1 Section 4.6.5

           The <species> with id 'M__6pgc_c' does not have a substanceUnits attribute, nor does its enclosing <model>.

        - In situations where a mathematical expression refers to a compartment, species or parameter, it is necessary to know the units of the object to establish unit consistency. In models where the units of an object have not been declared, libSBML does not yet have the functionality to accurately verify the consistency of the units in mathematical expressions referring to that object. 

           The units of the <species> 'M__6pgl_c' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.

        - If the attribute 'substanceUnits' in a Species object has not been set, then the unit of measurement associated with the species' quantity is determined by the value of the enclosing Model object's 'substanceUnits' attribute. If neither the Species object's 'substanceUnits' attribute nor the enclosing Model object's 'substanceUnits' attribute are set, then the unit of that species' quantity is undefined.

          Reference: L3V1 Section 4.6.5

           The <species> with id 'M__6pgl_c' does not have a substanceUnits attribute, nor does its enclosing <model>.

        - In situations where a mathematical expression refers to a compartment, species or parameter, it is necessary to know the units of the object to establish unit consistency. In models where the units of an object have not been declared, libSBML does not yet have the functionality to accurately verify the consistency of the units in mathematical expressions referring to that object. 

           The units of the <species> 'M_accoa_c' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.

        - If the attribute 'substanceUnits' in a Species object has not been set, then the unit of measurement associated with the species' quantity is determined by the value of the enclosing Model object's 'substanceUnits' attribute. If neither the Species object's 'substanceUnits' attribute nor the enclosing Model object's 'substanceUnits' attribute are set, then the unit of that species' quantity is undefined.

          Reference: L3V1 Section 4.6.5

           The <species> with id 'M_accoa_c' does not have a substanceUnits attribute, nor does its enclosing <model>.

        - In situations where a mathematical expression refers to a compartment, species or parameter, it is necessary to know the units of the object to establish unit consistency. In models where the units of an object have not been declared, libSBML does not yet have the functionality to accurately verify the consistency of the units in mathematical expressions referring to that object. 

           The units of the <species> 'M_ade_c' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.

        - If the attribute 'substanceUnits' in a Species object has not been set, then the unit of measurement associated with the species' quantity is determined by the value of the enclosing Model object's 'substanceUnits' attribute. If neither the Species object's 'substanceUnits' attribute nor the enclosing Model object's 'substanceUnits' attribute are set, then the unit of that species' quantity is undefined.

          Reference: L3V1 Section 4.6.5

           The <species> with id 'M_ade_c' does not have a substanceUnits attribute, nor does its enclosing <model>.

        - In situations where a mathematical expression refers to a compartment, species or parameter, it is necessary to know the units of the object to establish unit consistency. In models where the units of an object have not been declared, libSBML does not yet have the functionality to accurately verify the consistency of the units in mathematical expressions referring to that object. 

           The units of the <species> 'M_ade_e' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.

        - If the attribute 'substanceUnits' in a Species object has not been set, then the unit of measurement associated with the species' quantity is determined by the value of the enclosing Model object's 'substanceUnits' attribute. If neither the Species object's 'substanceUnits' attribute nor the enclosing Model object's 'substanceUnits' attribute are set, then the unit of that species' quantity is undefined.

          Reference: L3V1 Section 4.6.5

           The <species> with id 'M_ade_e' does not have a substanceUnits attribute, nor does its enclosing <model>.

        - In situations where a mathematical expression refers to a compartment, species or parameter, it is necessary to know the units of the object to establish unit consistency. In models where the units of an object have not been declared, libSBML does not yet have the functionality to accurately verify the consistency of the units in mathematical expressions referring to that object. 

           The units of the <species> 'M_adn_c' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.

        - If the attribute 'substanceUnits' in a Species object has not been set, then the unit of measurement associated with the species' quantity is determined by the value of the enclosing Model object's 'substanceUnits' attribute. If neither the Species object's 'substanceUnits' attribute nor the enclosing Model object's 'substanceUnits' attribute are set, then the unit of that species' quantity is undefined.

          Reference: L3V1 Section 4.6.5

           The <species> with id 'M_adn_c' does not have a substanceUnits attribute, nor does its enclosing <model>.

        - In situations where a mathematical expression refers to a compartment, species or parameter, it is necessary to know the units of the object to establish unit consistency. In models where the units of an object have not been declared, libSBML does not yet have the functionality to accurately verify the consistency of the units in mathematical expressions referring to that object. 

           The units of the <species> 'M_adn_e' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.

        - If the attribute 'substanceUnits' in a Species object has not been set, then the unit of measurement associated with the species' quantity is determined by the value of the enclosing Model object's 'substanceUnits' attribute. If neither the Species object's 'substanceUnits' attribute nor the enclosing Model object's 'substanceUnits' attribute are set, then the unit of that species' quantity is undefined.

          Reference: L3V1 Section 4.6.5

           The <species> with id 'M_adn_e' does not have a substanceUnits attribute, nor does its enclosing <model>.

        - In situations where a mathematical expression refers to a compartment, species or parameter, it is necessary to know the units of the object to establish unit consistency. In models where the units of an object have not been declared, libSBML does not yet have the functionality to accurately verify the consistency of the units in mathematical expressions referring to that object. 

           The units of the <species> 'M_adp_c' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.

        - If the attribute 'substanceUnits' in a Species object has not been set, then the unit of measurement associated with the species' quantity is determined by the value of the enclosing Model object's 'substanceUnits' attribute. If neither the Species object's 'substanceUnits' attribute nor the enclosing Model object's 'substanceUnits' attribute are set, then the unit of that species' quantity is undefined.

          Reference: L3V1 Section 4.6.5

           The <species> with id 'M_adp_c' does not have a substanceUnits attribute, nor does its enclosing <model>.

        - In situations where a mathematical expression refers to a compartment, species or parameter, it is necessary to know the units of the object to establish unit consistency. In models where the units of an object have not been declared, libSBML does not yet have the functionality to accurately verify the consistency of the units in mathematical expressions referring to that object. 

           The units of the <species> 'M_ahcys_c' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.

        - If the attribute 'substanceUnits' in a Species object has not been set, then the unit of measurement associated with the species' quantity is determined by the value of the enclosing Model object's 'substanceUnits' attribute. If neither the Species object's 'substanceUnits' attribute nor the enclosing Model object's 'substanceUnits' attribute are set, then the unit of that species' quantity is undefined.

          Reference: L3V1 Section 4.6.5

           The <species> with id 'M_ahcys_c' does not have a substanceUnits attribute, nor does its enclosing <model>.

        - In situations where a mathematical expression refers to a compartment, species or parameter, it is necessary to know the units of the object to establish unit consistency. In models where the units of an object have not been declared, libSBML does not yet have the functionality to accurately verify the consistency of the units in mathematical expressions referring to that object. 

           The units of the <species> 'M_akg_c' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.

        - If the attribute 'substanceUnits' in a Species object has not been set, then the unit of measurement associated with the species' quantity is determined by the value of the enclosing Model object's 'substanceUnits' attribute. If neither the Species object's 'substanceUnits' attribute nor the enclosing Model object's 'substanceUnits' attribute are set, then the unit of that species' quantity is undefined.

          Reference: L3V1 Section 4.6.5

           The <species> with id 'M_akg_c' does not have a substanceUnits attribute, nor does its enclosing <model>.

        - In situations where a mathematical expression refers to a compartment, species or parameter, it is necessary to know the units of the object to establish unit consistency. In models where the units of an object have not been declared, libSBML does not yet have the functionality to accurately verify the consistency of the units in mathematical expressions referring to that object. 

           The units of the <species> 'M_akg_e' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.

        - If the attribute 'substanceUnits' in a Species object has not been set, then the unit of measurement associated with the species' quantity is determined by the value of the enclosing Model object's 'substanceUnits' attribute. If neither the Species object's 'substanceUnits' attribute nor the enclosing Model object's 'substanceUnits' attribute are set, then the unit of that species' quantity is undefined.

          Reference: L3V1 Section 4.6.5

           The <species> with id 'M_akg_e' does not have a substanceUnits attribute, nor does its enclosing <model>.

        - In situations where a mathematical expression refers to a compartment, species or parameter, it is necessary to know the units of the object to establish unit consistency. In models where the units of an object have not been declared, libSBML does not yet have the functionality to accurately verify the consistency of the units in mathematical expressions referring to that object. 

           The units of the <species> 'M_ala__L_c' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.

        - If the attribute 'substanceUnits' in a Species object has not been set, then the unit of measurement associated with the species' quantity is determined by the value of the enclosing Model object's 'substanceUnits' attribute. If neither the Species object's 'substanceUnits' attribute nor the enclosing Model object's 'substanceUnits' attribute are set, then the unit of that species' quantity is undefined.

          Reference: L3V1 Section 4.6.5

           The <species> with id 'M_ala__L_c' does not have a substanceUnits attribute, nor does its enclosing <model>.

        - In situations where a mathematical expression refers to a compartment, species or parameter, it is necessary to know the units of the object to establish unit consistency. In models where the units of an object have not been declared, libSBML does not yet have the functionality to accurately verify the consistency of the units in mathematical expressions referring to that object. 

           The units of the <species> 'M_ala__L_e' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.

        - If the attribute 'substanceUnits' in a Species object has not been set, then the unit of measurement associated with the species' quantity is determined by the value of the enclosing Model object's 'substanceUnits' attribute. If neither the Species object's 'substanceUnits' attribute nor the enclosing Model object's 'substanceUnits' attribute are set, then the unit of that species' quantity is undefined.

          Reference: L3V1 Section 4.6.5

           The <species> with id 'M_ala__L_e' does not have a substanceUnits attribute, nor does its enclosing <model>.

        - In situations where a mathematical expression refers to a compartment, species or parameter, it is necessary to know the units of the object to establish unit consistency. In models where the units of an object have not been declared, libSBML does not yet have the functionality to accurately verify the consistency of the units in mathematical expressions referring to that object. 

           The units of the <species> 'M_amet_c' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.

        - If the attribute 'substanceUnits' in a Species object has not been set, then the unit of measurement associated with the species' quantity is determined by the value of the enclosing Model object's 'substanceUnits' attribute. If neither the Species object's 'substanceUnits' attribute nor the enclosing Model object's 'substanceUnits' attribute are set, then the unit of that species' quantity is undefined.

          Reference: L3V1 Section 4.6.5

           The <species> with id 'M_amet_c' does not have a substanceUnits attribute, nor does its enclosing <model>.

        - In situations where a mathematical expression refers to a compartment, species or parameter, it is necessary to know the units of the object to establish unit consistency. In models where the units of an object have not been declared, libSBML does not yet have the functionality to accurately verify the consistency of the units in mathematical expressions referring to that object. 

           The units of the <species> 'M_ametam_c' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.

        - If the attribute 'substanceUnits' in a Species object has not been set, then the unit of measurement associated with the species' quantity is determined by the value of the enclosing Model object's 'substanceUnits' attribute. If neither the Species object's 'substanceUnits' attribute nor the enclosing Model object's 'substanceUnits' attribute are set, then the unit of that species' quantity is undefined.

          Reference: L3V1 Section 4.6.5

           The <species> with id 'M_ametam_c' does not have a substanceUnits attribute, nor does its enclosing <model>.

        - In situations where a mathematical expression refers to a compartment, species or parameter, it is necessary to know the units of the object to establish unit consistency. In models where the units of an object have not been declared, libSBML does not yet have the functionality to accurately verify the consistency of the units in mathematical expressions referring to that object. 

           The units of the <species> 'M_amp_c' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.

        - If the attribute 'substanceUnits' in a Species object has not been set, then the unit of measurement associated with the species' quantity is determined by the value of the enclosing Model object's 'substanceUnits' attribute. If neither the Species object's 'substanceUnits' attribute nor the enclosing Model object's 'substanceUnits' attribute are set, then the unit of that species' quantity is undefined.

          Reference: L3V1 Section 4.6.5

           The <species> with id 'M_amp_c' does not have a substanceUnits attribute, nor does its enclosing <model>.

        - In situations where a mathematical expression refers to a compartment, species or parameter, it is necessary to know the units of the object to establish unit consistency. In models where the units of an object have not been declared, libSBML does not yet have the functionality to accurately verify the consistency of the units in mathematical expressions referring to that object. 

           The units of the <species> 'M_arg__L_c' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.

        - If the attribute 'substanceUnits' in a Species object has not been set, then the unit of measurement associated with the species' quantity is determined by the value of the enclosing Model object's 'substanceUnits' attribute. If neither the Species object's 'substanceUnits' attribute nor the enclosing Model object's 'substanceUnits' attribute are set, then the unit of that species' quantity is undefined.

          Reference: L3V1 Section 4.6.5

           The <species> with id 'M_arg__L_c' does not have a substanceUnits attribute, nor does its enclosing <model>.

        - In situations where a mathematical expression refers to a compartment, species or parameter, it is necessary to know the units of the object to establish unit consistency. In models where the units of an object have not been declared, libSBML does not yet have the functionality to accurately verify the consistency of the units in mathematical expressions referring to that object. 

           The units of the <species> 'M_arg__L_e' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.

        - If the attribute 'substanceUnits' in a Species object has not been set, then the unit of measurement associated with the species' quantity is determined by the value of the enclosing Model object's 'substanceUnits' attribute. If neither the Species object's 'substanceUnits' attribute nor the enclosing Model object's 'substanceUnits' attribute are set, then the unit of that species' quantity is undefined.

          Reference: L3V1 Section 4.6.5

           The <species> with id 'M_arg__L_e' does not have a substanceUnits attribute, nor does its enclosing <model>.

        - In situations where a mathematical expression refers to a compartment, species or parameter, it is necessary to know the units of the object to establish unit consistency. In models where the units of an object have not been declared, libSBML does not yet have the functionality to accurately verify the consistency of the units in mathematical expressions referring to that object. 

           The units of the <species> 'M_ascb__L_c' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.

        - If the attribute 'substanceUnits' in a Species object has not been set, then the unit of measurement associated with the species' quantity is determined by the value of the enclosing Model object's 'substanceUnits' attribute. If neither the Species object's 'substanceUnits' attribute nor the enclosing Model object's 'substanceUnits' attribute are set, then the unit of that species' quantity is undefined.

          Reference: L3V1 Section 4.6.5

           The <species> with id 'M_ascb__L_c' does not have a substanceUnits attribute, nor does its enclosing <model>.

        - In situations where a mathematical expression refers to a compartment, species or parameter, it is necessary to know the units of the object to establish unit consistency. In models where the units of an object have not been declared, libSBML does not yet have the functionality to accurately verify the consistency of the units in mathematical expressions referring to that object. 

           The units of the <species> 'M_ascb__L_e' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.

        - If the attribute 'substanceUnits' in a Species object has not been set, then the unit of measurement associated with the species' quantity is determined by the value of the enclosing Model object's 'substanceUnits' attribute. If neither the Species object's 'substanceUnits' attribute nor the enclosing Model object's 'substanceUnits' attribute are set, then the unit of that species' quantity is undefined.

          Reference: L3V1 Section 4.6.5

           The <species> with id 'M_ascb__L_e' does not have a substanceUnits attribute, nor does its enclosing <model>.

        - In situations where a mathematical expression refers to a compartment, species or parameter, it is necessary to know the units of the object to establish unit consistency. In models where the units of an object have not been declared, libSBML does not yet have the functionality to accurately verify the consistency of the units in mathematical expressions referring to that object. 

           The units of the <species> 'M_asn__L_c' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.

        - If the attribute 'substanceUnits' in a Species object has not been set, then the unit of measurement associated with the species' quantity is determined by the value of the enclosing Model object's 'substanceUnits' attribute. If neither the Species object's 'substanceUnits' attribute nor the enclosing Model object's 'substanceUnits' attribute are set, then the unit of that species' quantity is undefined.

          Reference: L3V1 Section 4.6.5

           The <species> with id 'M_asn__L_c' does not have a substanceUnits attribute, nor does its enclosing <model>.

        - In situations where a mathematical expression refers to a compartment, species or parameter, it is necessary to know the units of the object to establish unit consistency. In models where the units of an object have not been declared, libSBML does not yet have the functionality to accurately verify the consistency of the units in mathematical expressions referring to that object. 

           The units of the <species> 'M_asn__L_e' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.

        - If the attribute 'substanceUnits' in a Species object has not been set, then the unit of measurement associated with the species' quantity is determined by the value of the enclosing Model object's 'substanceUnits' attribute. If neither the Species object's 'substanceUnits' attribute nor the enclosing Model object's 'substanceUnits' attribute are set, then the unit of that species' quantity is undefined.

          Reference: L3V1 Section 4.6.5

           The <species> with id 'M_asn__L_e' does not have a substanceUnits attribute, nor does its enclosing <model>.

        - In situations where a mathematical expression refers to a compartment, species or parameter, it is necessary to know the units of the object to establish unit consistency. In models where the units of an object have not been declared, libSBML does not yet have the functionality to accurately verify the consistency of the units in mathematical expressions referring to that object. 

           The units of the <species> 'M_atp_c' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.

        - If the attribute 'substanceUnits' in a Species object has not been set, then the unit of measurement associated with the species' quantity is determined by the value of the enclosing Model object's 'substanceUnits' attribute. If neither the Species object's 'substanceUnits' attribute nor the enclosing Model object's 'substanceUnits' attribute are set, then the unit of that species' quantity is undefined.

          Reference: L3V1 Section 4.6.5

           The <species> with id 'M_atp_c' does not have a substanceUnits attribute, nor does its enclosing <model>.

        - In situations where a mathematical expression refers to a compartment, species or parameter, it is necessary to know the units of the object to establish unit consistency. In models where the units of an object have not been declared, libSBML does not yet have the functionality to accurately verify the consistency of the units in mathematical expressions referring to that object. 

           The units of the <species> 'M_band_c' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.

        - If the attribute 'substanceUnits' in a Species object has not been set, then the unit of measurement associated with the species' quantity is determined by the value of the enclosing Model object's 'substanceUnits' attribute. If neither the Species object's 'substanceUnits' attribute nor the enclosing Model object's 'substanceUnits' attribute are set, then the unit of that species' quantity is undefined.

          Reference: L3V1 Section 4.6.5

           The <species> with id 'M_band_c' does not have a substanceUnits attribute, nor does its enclosing <model>.

        - In situations where a mathematical expression refers to a compartment, species or parameter, it is necessary to know the units of the object to establish unit consistency. In models where the units of an object have not been declared, libSBML does not yet have the functionality to accurately verify the consistency of the units in mathematical expressions referring to that object. 

           The units of the <species> 'M_bandmt_c' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.

        - If the attribute 'substanceUnits' in a Species object has not been set, then the unit of measurement associated with the species' quantity is determined by the value of the enclosing Model object's 'substanceUnits' attribute. If neither the Species object's 'substanceUnits' attribute nor the enclosing Model object's 'substanceUnits' attribute are set, then the unit of that species' quantity is undefined.

          Reference: L3V1 Section 4.6.5

           The <species> with id 'M_bandmt_c' does not have a substanceUnits attribute, nor does its enclosing <model>.

        - In situations where a mathematical expression refers to a compartment, species or parameter, it is necessary to know the units of the object to establish unit consistency. In models where the units of an object have not been declared, libSBML does not yet have the functionality to accurately verify the consistency of the units in mathematical expressions referring to that object. 

           The units of the <species> 'M_ca2_c' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.

        - If the attribute 'substanceUnits' in a Species object has not been set, then the unit of measurement associated with the species' quantity is determined by the value of the enclosing Model object's 'substanceUnits' attribute. If neither the Species object's 'substanceUnits' attribute nor the enclosing Model object's 'substanceUnits' attribute are set, then the unit of that species' quantity is undefined.

          Reference: L3V1 Section 4.6.5

           The <species> with id 'M_ca2_c' does not have a substanceUnits attribute, nor does its enclosing <model>.

        - In situations where a mathematical expression refers to a compartment, species or parameter, it is necessary to know the units of the object to establish unit consistency. In models where the units of an object have not been declared, libSBML does not yet have the functionality to accurately verify the consistency of the units in mathematical expressions referring to that object. 

           The units of the <species> 'M_ca2_e' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.

        - If the attribute 'substanceUnits' in a Species object has not been set, then the unit of measurement associated with the species' quantity is determined by the value of the enclosing Model object's 'substanceUnits' attribute. If neither the Species object's 'substanceUnits' attribute nor the enclosing Model object's 'substanceUnits' attribute are set, then the unit of that species' quantity is undefined.

          Reference: L3V1 Section 4.6.5

           The <species> with id 'M_ca2_e' does not have a substanceUnits attribute, nor does its enclosing <model>.

        - In situations where a mathematical expression refers to a compartment, species or parameter, it is necessary to know the units of the object to establish unit consistency. In models where the units of an object have not been declared, libSBML does not yet have the functionality to accurately verify the consistency of the units in mathematical expressions referring to that object. 

           The units of the <species> 'M_camp_c' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.

        - If the attribute 'substanceUnits' in a Species object has not been set, then the unit of measurement associated with the species' quantity is determined by the value of the enclosing Model object's 'substanceUnits' attribute. If neither the Species object's 'substanceUnits' attribute nor the enclosing Model object's 'substanceUnits' attribute are set, then the unit of that species' quantity is undefined.

          Reference: L3V1 Section 4.6.5

           The <species> with id 'M_camp_c' does not have a substanceUnits attribute, nor does its enclosing <model>.

        - In situations where a mathematical expression refers to a compartment, species or parameter, it is necessary to know the units of the object to establish unit consistency. In models where the units of an object have not been declared, libSBML does not yet have the functionality to accurately verify the consistency of the units in mathematical expressions referring to that object. 

           The units of the <species> 'M_camp_e' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.

        - If the attribute 'substanceUnits' in a Species object has not been set, then the unit of measurement associated with the species' quantity is determined by the value of the enclosing Model object's 'substanceUnits' attribute. If neither the Species object's 'substanceUnits' attribute nor the enclosing Model object's 'substanceUnits' attribute are set, then the unit of that species' quantity is undefined.

          Reference: L3V1 Section 4.6.5

           The <species> with id 'M_camp_e' does not have a substanceUnits attribute, nor does its enclosing <model>.

        - In situations where a mathematical expression refers to a compartment, species or parameter, it is necessary to know the units of the object to establish unit consistency. In models where the units of an object have not been declared, libSBML does not yet have the functionality to accurately verify the consistency of the units in mathematical expressions referring to that object. 

           The units of the <species> 'M_cit_c' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.

        - If the attribute 'substanceUnits' in a Species object has not been set, then the unit of measurement associated with the species' quantity is determined by the value of the enclosing Model object's 'substanceUnits' attribute. If neither the Species object's 'substanceUnits' attribute nor the enclosing Model object's 'substanceUnits' attribute are set, then the unit of that species' quantity is undefined.

          Reference: L3V1 Section 4.6.5

           The <species> with id 'M_cit_c' does not have a substanceUnits attribute, nor does its enclosing <model>.

        - In situations where a mathematical expression refers to a compartment, species or parameter, it is necessary to know the units of the object to establish unit consistency. In models where the units of an object have not been declared, libSBML does not yet have the functionality to accurately verify the consistency of the units in mathematical expressions referring to that object. 

           The units of the <species> 'M_cit_e' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.

        - If the attribute 'substanceUnits' in a Species object has not been set, then the unit of measurement associated with the species' quantity is determined by the value of the enclosing Model object's 'substanceUnits' attribute. If neither the Species object's 'substanceUnits' attribute nor the enclosing Model object's 'substanceUnits' attribute are set, then the unit of that species' quantity is undefined.

          Reference: L3V1 Section 4.6.5

           The <species> with id 'M_cit_e' does not have a substanceUnits attribute, nor does its enclosing <model>.

        - In situations where a mathematical expression refers to a compartment, species or parameter, it is necessary to know the units of the object to establish unit consistency. In models where the units of an object have not been declared, libSBML does not yet have the functionality to accurately verify the consistency of the units in mathematical expressions referring to that object. 

           The units of the <species> 'M_cl_c' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.

        - If the attribute 'substanceUnits' in a Species object has not been set, then the unit of measurement associated with the species' quantity is determined by the value of the enclosing Model object's 'substanceUnits' attribute. If neither the Species object's 'substanceUnits' attribute nor the enclosing Model object's 'substanceUnits' attribute are set, then the unit of that species' quantity is undefined.

          Reference: L3V1 Section 4.6.5

           The <species> with id 'M_cl_c' does not have a substanceUnits attribute, nor does its enclosing <model>.

        - In situations where a mathematical expression refers to a compartment, species or parameter, it is necessary to know the units of the object to establish unit consistency. In models where the units of an object have not been declared, libSBML does not yet have the functionality to accurately verify the consistency of the units in mathematical expressions referring to that object. 

           The units of the <species> 'M_cl_e' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.

        - If the attribute 'substanceUnits' in a Species object has not been set, then the unit of measurement associated with the species' quantity is determined by the value of the enclosing Model object's 'substanceUnits' attribute. If neither the Species object's 'substanceUnits' attribute nor the enclosing Model object's 'substanceUnits' attribute are set, then the unit of that species' quantity is undefined.

          Reference: L3V1 Section 4.6.5

           The <species> with id 'M_cl_e' does not have a substanceUnits attribute, nor does its enclosing <model>.

        - In situations where a mathematical expression refers to a compartment, species or parameter, it is necessary to know the units of the object to establish unit consistency. In models where the units of an object have not been declared, libSBML does not yet have the functionality to accurately verify the consistency of the units in mathematical expressions referring to that object. 

           The units of the <species> 'M_co2_c' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.

        - If the attribute 'substanceUnits' in a Species object has not been set, then the unit of measurement associated with the species' quantity is determined by the value of the enclosing Model object's 'substanceUnits' attribute. If neither the Species object's 'substanceUnits' attribute nor the enclosing Model object's 'substanceUnits' attribute are set, then the unit of that species' quantity is undefined.

          Reference: L3V1 Section 4.6.5

           The <species> with id 'M_co2_c' does not have a substanceUnits attribute, nor does its enclosing <model>.

        - In situations where a mathematical expression refers to a compartment, species or parameter, it is necessary to know the units of the object to establish unit consistency. In models where the units of an object have not been declared, libSBML does not yet have the functionality to accurately verify the consistency of the units in mathematical expressions referring to that object. 

           The units of the <species> 'M_co2_e' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.

        - If the attribute 'substanceUnits' in a Species object has not been set, then the unit of measurement associated with the species' quantity is determined by the value of the enclosing Model object's 'substanceUnits' attribute. If neither the Species object's 'substanceUnits' attribute nor the enclosing Model object's 'substanceUnits' attribute are set, then the unit of that species' quantity is undefined.

          Reference: L3V1 Section 4.6.5

           The <species> with id 'M_co2_e' does not have a substanceUnits attribute, nor does its enclosing <model>.

        - In situations where a mathematical expression refers to a compartment, species or parameter, it is necessary to know the units of the object to establish unit consistency. In models where the units of an object have not been declared, libSBML does not yet have the functionality to accurately verify the consistency of the units in mathematical expressions referring to that object. 

           The units of the <species> 'M_coa_c' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.

        - If the attribute 'substanceUnits' in a Species object has not been set, then the unit of measurement associated with the species' quantity is determined by the value of the enclosing Model object's 'substanceUnits' attribute. If neither the Species object's 'substanceUnits' attribute nor the enclosing Model object's 'substanceUnits' attribute are set, then the unit of that species' quantity is undefined.

          Reference: L3V1 Section 4.6.5

           The <species> with id 'M_coa_c' does not have a substanceUnits attribute, nor does its enclosing <model>.

        - In situations where a mathematical expression refers to a compartment, species or parameter, it is necessary to know the units of the object to establish unit consistency. In models where the units of an object have not been declared, libSBML does not yet have the functionality to accurately verify the consistency of the units in mathematical expressions referring to that object. 

           The units of the <species> 'M_cys__L_c' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.

        - If the attribute 'substanceUnits' in a Species object has not been set, then the unit of measurement associated with the species' quantity is determined by the value of the enclosing Model object's 'substanceUnits' attribute. If neither the Species object's 'substanceUnits' attribute nor the enclosing Model object's 'substanceUnits' attribute are set, then the unit of that species' quantity is undefined.

          Reference: L3V1 Section 4.6.5

           The <species> with id 'M_cys__L_c' does not have a substanceUnits attribute, nor does its enclosing <model>.

        - In situations where a mathematical expression refers to a compartment, species or parameter, it is necessary to know the units of the object to establish unit consistency. In models where the units of an object have not been declared, libSBML does not yet have the functionality to accurately verify the consistency of the units in mathematical expressions referring to that object. 

           The units of the <species> 'M_cys__L_e' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.

        - If the attribute 'substanceUnits' in a Species object has not been set, then the unit of measurement associated with the species' quantity is determined by the value of the enclosing Model object's 'substanceUnits' attribute. If neither the Species object's 'substanceUnits' attribute nor the enclosing Model object's 'substanceUnits' attribute are set, then the unit of that species' quantity is undefined.

          Reference: L3V1 Section 4.6.5

           The <species> with id 'M_cys__L_e' does not have a substanceUnits attribute, nor does its enclosing <model>.

        - In situations where a mathematical expression refers to a compartment, species or parameter, it is necessary to know the units of the object to establish unit consistency. In models where the units of an object have not been declared, libSBML does not yet have the functionality to accurately verify the consistency of the units in mathematical expressions referring to that object. 

           The units of the <species> 'M_dhap_c' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.

        - If the attribute 'substanceUnits' in a Species object has not been set, then the unit of measurement associated with the species' quantity is determined by the value of the enclosing Model object's 'substanceUnits' attribute. If neither the Species object's 'substanceUnits' attribute nor the enclosing Model object's 'substanceUnits' attribute are set, then the unit of that species' quantity is undefined.

          Reference: L3V1 Section 4.6.5

           The <species> with id 'M_dhap_c' does not have a substanceUnits attribute, nor does its enclosing <model>.

        - In situations where a mathematical expression refers to a compartment, species or parameter, it is necessary to know the units of the object to establish unit consistency. In models where the units of an object have not been declared, libSBML does not yet have the functionality to accurately verify the consistency of the units in mathematical expressions referring to that object. 

           The units of the <species> 'M_dhdascb_c' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.

        - If the attribute 'substanceUnits' in a Species object has not been set, then the unit of measurement associated with the species' quantity is determined by the va ...
biosimulators-daemon commented 3 years ago

Warnings

cli.CliDescribesSupportedEnvironmentVariablesInline (4.6 s)

Test that the inline help for a command-line interface describes the environment variables that the simulator supports.

Warnings:

  The inline help for a command-line interface for a simulation tool should describe the environment variables that the simulation tool supports.

  The command-line interface does not describe the following standard environment variables recognized by BioSimulators:
    - 'ALGORITHM_SUBSTITUTION_POLICY'
    - 'BUNDLE_OUTPUTS'
    - 'H5_REPORTS_PATH'
    - 'KEEP_INDIVIDUAL_OUTPUTS'
    - 'LOG_PATH'
    - 'PLOTS_PATH'
    - 'REPORTS_PATH'
    - 'REPORT_FORMATS'
    - 'SAVE_PLOT_DATA'
    - 'VALIDATE_IMAGES'
    - 'VALIDATE_OMEX_MANIFESTS'
    - 'VALIDATE_OMEX_METADATA'
    - 'VALIDATE_SEDML'
    - 'VALIDATE_SEDML_MODELS'
    - 'VERBOSE'
    - 'VIZ_FORMATS'

  If the simulation tool implements these variables, they should be described in the inline help for its command-line interface.

  Note, support for these environment variables is optional. Simulation tools are not required to support these variables.

Log:

docker_image.DeclaresSupportedEnvironmentVariables (1.4 s)

Test if a Docker image declares the environment variables that is supports

Warnings:

  Docker images for simulation tools should declare the environment variables that they support.

  The Docker image does not declare the following standard environment variables recognized by BioSimulators:
    - 'ALGORITHM_SUBSTITUTION_POLICY'
    - 'BUNDLE_OUTPUTS'
    - 'H5_REPORTS_PATH'
    - 'KEEP_INDIVIDUAL_OUTPUTS'
    - 'LOG_PATH'
    - 'PLOTS_PATH'
    - 'REPORTS_PATH'
    - 'REPORT_FORMATS'
    - 'SAVE_PLOT_DATA'
    - 'VALIDATE_IMAGES'
    - 'VALIDATE_OMEX_MANIFESTS'
    - 'VALIDATE_OMEX_METADATA'
    - 'VALIDATE_SEDML'
    - 'VALIDATE_SEDML_MODELS'
    - 'VIZ_FORMATS'

  If the simulation tool implements these variables, they should be declared in the Dockerfile for the Docker image for the simulator.

  Note, support for these environment variables is optional. Simulation tools are not required to support these variables.

Log:

docker_image.HasBioContainersLabels (0.3 s)

Test that a Docker image has BioContainers labels with metadata about the image

Warnings:

  The Docker image should have the following BioContainers labels:
    extra.identifiers.biotools

Log:

biosimulators-daemon commented 3 years ago

Skips

log.SimulatorReportsTheStatusOfTheExecutionOfCombineArchives (19.1 s)

Test that simulator logs the execution of COMBINE/OMEX archives

Reason for skip:

  The image 'ghcr.io/biosimulators/biosimulators_masspy/masspy:0.1.2' could not execute the archive:

    Unknown error

Log:


  /usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31 BioSimulatorsWarning: The SED document is potentially incorrect.

    - Model `model` may be invalid.

      - The model file `WholeCellRBC_MA_Rates.xml` may be invalid.

        - In situations where a mathematical expression refers to time, the units of time should be consistent with the global time units of the model. In models where the 'timeUnits' attribute has not been declared, libSBML does not yet have the functionality to verify accurately the consistency of the units in such expressions. 

        - In situations where a mathematical expression refers to extent, the units of extent should be consistent with the global extent units of the model. In models where the 'extentUnits' attribute has not been declared, libSBML does not yet have the functionality to verify accurately the consistency of the units in such expressions. 

        - In situations where a mathematical expression refers to a compartment, species or parameter, it is necessary to know the units of the object to establish unit consistency. In models where the units of an object have not been declared, libSBML does not yet have the functionality to accurately verify the consistency of the units in mathematical expressions referring to that object. 

           The units of the <compartment> 'c' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.

        - If the attribute 'units' on a Compartment object having a 'spatialDimensions' attribute value of '3' has not been set, then the unit of measurement associated with the compartment's size is determined by the value of the enclosing Model object's 'volumeUnits' attribute. If neither the Compartment object's 'units' nor the enclosing Model object's 'volumeUnits' attributes are set, the unit of compartment size is undefined.

          Reference: L3V1 Section 4.5.4

        - In situations where a mathematical expression refers to a compartment, species or parameter, it is necessary to know the units of the object to establish unit consistency. In models where the units of an object have not been declared, libSBML does not yet have the functionality to accurately verify the consistency of the units in mathematical expressions referring to that object. 

           The units of the <compartment> 'e' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.

        - If the attribute 'units' on a Compartment object having a 'spatialDimensions' attribute value of '3' has not been set, then the unit of measurement associated with the compartment's size is determined by the value of the enclosing Model object's 'volumeUnits' attribute. If neither the Compartment object's 'units' nor the enclosing Model object's 'volumeUnits' attributes are set, the unit of compartment size is undefined.

          Reference: L3V1 Section 4.5.4

        - In situations where a mathematical expression refers to a compartment, species or parameter, it is necessary to know the units of the object to establish unit consistency. In models where the units of an object have not been declared, libSBML does not yet have the functionality to accurately verify the consistency of the units in mathematical expressions referring to that object. 

           The units of the <species> 'M__13dpg_c' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.

        - If the attribute 'substanceUnits' in a Species object has not been set, then the unit of measurement associated with the species' quantity is determined by the value of the enclosing Model object's 'substanceUnits' attribute. If neither the Species object's 'substanceUnits' attribute nor the enclosing Model object's 'substanceUnits' attribute are set, then the unit of that species' quantity is undefined.

          Reference: L3V1 Section 4.6.5

           The <species> with id 'M__13dpg_c' does not have a substanceUnits attribute, nor does its enclosing <model>.

        - In situations where a mathematical expression refers to a compartment, species or parameter, it is necessary to know the units of the object to establish unit consistency. In models where the units of an object have not been declared, libSBML does not yet have the functionality to accurately verify the consistency of the units in mathematical expressions referring to that object. 

           The units of the <species> 'M__23dpg_c' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.

        - If the attribute 'substanceUnits' in a Species object has not been set, then the unit of measurement associated with the species' quantity is determined by the value of the enclosing Model object's 'substanceUnits' attribute. If neither the Species object's 'substanceUnits' attribute nor the enclosing Model object's 'substanceUnits' attribute are set, then the unit of that species' quantity is undefined.

          Reference: L3V1 Section 4.6.5

           The <species> with id 'M__23dpg_c' does not have a substanceUnits attribute, nor does its enclosing <model>.

        - In situations where a mathematical expression refers to a compartment, species or parameter, it is necessary to know the units of the object to establish unit consistency. In models where the units of an object have not been declared, libSBML does not yet have the functionality to accurately verify the consistency of the units in mathematical expressions referring to that object. 

           The units of the <species> 'M__2kmb_c' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.

        - If the attribute 'substanceUnits' in a Species object has not been set, then the unit of measurement associated with the species' quantity is determined by the value of the enclosing Model object's 'substanceUnits' attribute. If neither the Species object's 'substanceUnits' attribute nor the enclosing Model object's 'substanceUnits' attribute are set, then the unit of that species' quantity is undefined.

          Reference: L3V1 Section 4.6.5

           The <species> with id 'M__2kmb_c' does not have a substanceUnits attribute, nor does its enclosing <model>.

        - In situations where a mathematical expression refers to a compartment, species or parameter, it is necessary to know the units of the object to establish unit consistency. In models where the units of an object have not been declared, libSBML does not yet have the functionality to accurately verify the consistency of the units in mathematical expressions referring to that object. 

           The units of the <species> 'M__2pg_c' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.

        - If the attribute 'substanceUnits' in a Species object has not been set, then the unit of measurement associated with the species' quantity is determined by the value of the enclosing Model object's 'substanceUnits' attribute. If neither the Species object's 'substanceUnits' attribute nor the enclosing Model object's 'substanceUnits' attribute are set, then the unit of that species' quantity is undefined.

          Reference: L3V1 Section 4.6.5

           The <species> with id 'M__2pg_c' does not have a substanceUnits attribute, nor does its enclosing <model>.

        - In situations where a mathematical expression refers to a compartment, species or parameter, it is necessary to know the units of the object to establish unit consistency. In models where the units of an object have not been declared, libSBML does not yet have the functionality to accurately verify the consistency of the units in mathematical expressions referring to that object. 

           The units of the <species> 'M__35cgmp_c' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.

        - If the attribute 'substanceUnits' in a Species object has not been set, then the unit of measurement associated with the species' quantity is determined by the value of the enclosing Model object's 'substanceUnits' attribute. If neither the Species object's 'substanceUnits' attribute nor the enclosing Model object's 'substanceUnits' attribute are set, then the unit of that species' quantity is undefined.

          Reference: L3V1 Section 4.6.5

           The <species> with id 'M__35cgmp_c' does not have a substanceUnits attribute, nor does its enclosing <model>.

        - In situations where a mathematical expression refers to a compartment, species or parameter, it is necessary to know the units of the object to establish unit consistency. In models where the units of an object have not been declared, libSBML does not yet have the functionality to accurately verify the consistency of the units in mathematical expressions referring to that object. 

           The units of the <species> 'M__35cgmp_e' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.

        - If the attribute 'substanceUnits' in a Species object has not been set, then the unit of measurement associated with the species' quantity is determined by the value of the enclosing Model object's 'substanceUnits' attribute. If neither the Species object's 'substanceUnits' attribute nor the enclosing Model object's 'substanceUnits' attribute are set, then the unit of that species' quantity is undefined.

          Reference: L3V1 Section 4.6.5

           The <species> with id 'M__35cgmp_e' does not have a substanceUnits attribute, nor does its enclosing <model>.

        - In situations where a mathematical expression refers to a compartment, species or parameter, it is necessary to know the units of the object to establish unit consistency. In models where the units of an object have not been declared, libSBML does not yet have the functionality to accurately verify the consistency of the units in mathematical expressions referring to that object. 

           The units of the <species> 'M__3pg_c' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.

        - If the attribute 'substanceUnits' in a Species object has not been set, then the unit of measurement associated with the species' quantity is determined by the value of the enclosing Model object's 'substanceUnits' attribute. If neither the Species object's 'substanceUnits' attribute nor the enclosing Model object's 'substanceUnits' attribute are set, then the unit of that species' quantity is undefined.

          Reference: L3V1 Section 4.6.5

           The <species> with id 'M__3pg_c' does not have a substanceUnits attribute, nor does its enclosing <model>.

        - In situations where a mathematical expression refers to a compartment, species or parameter, it is necessary to know the units of the object to establish unit consistency. In models where the units of an object have not been declared, libSBML does not yet have the functionality to accurately verify the consistency of the units in mathematical expressions referring to that object. 

           The units of the <species> 'M__5mdr1p_c' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.

        - If the attribute 'substanceUnits' in a Species object has not been set, then the unit of measurement associated with the species' quantity is determined by the value of the enclosing Model object's 'substanceUnits' attribute. If neither the Species object's 'substanceUnits' attribute nor the enclosing Model object's 'substanceUnits' attribute are set, then the unit of that species' quantity is undefined.

          Reference: L3V1 Section 4.6.5

           The <species> with id 'M__5mdr1p_c' does not have a substanceUnits attribute, nor does its enclosing <model>.

        - In situations where a mathematical expression refers to a compartment, species or parameter, it is necessary to know the units of the object to establish unit consistency. In models where the units of an object have not been declared, libSBML does not yet have the functionality to accurately verify the consistency of the units in mathematical expressions referring to that object. 

           The units of the <species> 'M__5mdru1p_c' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.

        - If the attribute 'substanceUnits' in a Species object has not been set, then the unit of measurement associated with the species' quantity is determined by the value of the enclosing Model object's 'substanceUnits' attribute. If neither the Species object's 'substanceUnits' attribute nor the enclosing Model object's 'substanceUnits' attribute are set, then the unit of that species' quantity is undefined.

          Reference: L3V1 Section 4.6.5

           The <species> with id 'M__5mdru1p_c' does not have a substanceUnits attribute, nor does its enclosing <model>.

        - In situations where a mathematical expression refers to a compartment, species or parameter, it is necessary to know the units of the object to establish unit consistency. In models where the units of an object have not been declared, libSBML does not yet have the functionality to accurately verify the consistency of the units in mathematical expressions referring to that object. 

           The units of the <species> 'M__5mta_c' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.

        - If the attribute 'substanceUnits' in a Species object has not been set, then the unit of measurement associated with the species' quantity is determined by the value of the enclosing Model object's 'substanceUnits' attribute. If neither the Species object's 'substanceUnits' attribute nor the enclosing Model object's 'substanceUnits' attribute are set, then the unit of that species' quantity is undefined.

          Reference: L3V1 Section 4.6.5

           The <species> with id 'M__5mta_c' does not have a substanceUnits attribute, nor does its enclosing <model>.

        - In situations where a mathematical expression refers to a compartment, species or parameter, it is necessary to know the units of the object to establish unit consistency. In models where the units of an object have not been declared, libSBML does not yet have the functionality to accurately verify the consistency of the units in mathematical expressions referring to that object. 

           The units of the <species> 'M__5oxpro_c' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.

        - If the attribute 'substanceUnits' in a Species object has not been set, then the unit of measurement associated with the species' quantity is determined by the value of the enclosing Model object's 'substanceUnits' attribute. If neither the Species object's 'substanceUnits' attribute nor the enclosing Model object's 'substanceUnits' attribute are set, then the unit of that species' quantity is undefined.

          Reference: L3V1 Section 4.6.5

           The <species> with id 'M__5oxpro_c' does not have a substanceUnits attribute, nor does its enclosing <model>.

        - In situations where a mathematical expression refers to a compartment, species or parameter, it is necessary to know the units of the object to establish unit consistency. In models where the units of an object have not been declared, libSBML does not yet have the functionality to accurately verify the consistency of the units in mathematical expressions referring to that object. 

           The units of the <species> 'M__5oxpro_e' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.

        - If the attribute 'substanceUnits' in a Species object has not been set, then the unit of measurement associated with the species' quantity is determined by the value of the enclosing Model object's 'substanceUnits' attribute. If neither the Species object's 'substanceUnits' attribute nor the enclosing Model object's 'substanceUnits' attribute are set, then the unit of that species' quantity is undefined.

          Reference: L3V1 Section 4.6.5

           The <species> with id 'M__5oxpro_e' does not have a substanceUnits attribute, nor does its enclosing <model>.

        - In situations where a mathematical expression refers to a compartment, species or parameter, it is necessary to know the units of the object to establish unit consistency. In models where the units of an object have not been declared, libSBML does not yet have the functionality to accurately verify the consistency of the units in mathematical expressions referring to that object. 

           The units of the <species> 'M__6pgc_c' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.

        - If the attribute 'substanceUnits' in a Species object has not been set, then the unit of measurement associated with the species' quantity is determined by the value of the enclosing Model object's 'substanceUnits' attribute. If neither the Species object's 'substanceUnits' attribute nor the enclosing Model object's 'substanceUnits' attribute are set, then the unit of that species' quantity is undefined.

          Reference: L3V1 Section 4.6.5

           The <species> with id 'M__6pgc_c' does not have a substanceUnits attribute, nor does its enclosing <model>.

        - In situations where a mathematical expression refers to a compartment, species or parameter, it is necessary to know the units of the object to establish unit consistency. In models where the units of an object have not been declared, libSBML does not yet have the functionality to accurately verify the consistency of the units in mathematical expressions referring to that object. 

           The units of the <species> 'M__6pgl_c' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.

        - If the attribute 'substanceUnits' in a Species object has not been set, then the unit of measurement associated with the species' quantity is determined by the value of the enclosing Model object's 'substanceUnits' attribute. If neither the Species object's 'substanceUnits' attribute nor the enclosing Model object's 'substanceUnits' attribute are set, then the unit of that species' quantity is undefined.

          Reference: L3V1 Section 4.6.5

           The <species> with id 'M__6pgl_c' does not have a substanceUnits attribute, nor does its enclosing <model>.

        - In situations where a mathematical expression refers to a compartment, species or parameter, it is necessary to know the units of the object to establish unit consistency. In models where the units of an object have not been declared, libSBML does not yet have the functionality to accurately verify the consistency of the units in mathematical expressions referring to that object. 

           The units of the <species> 'M_accoa_c' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.

        - If the attribute 'substanceUnits' in a Species object has not been set, then the unit of measurement associated with the species' quantity is determined by the value of the enclosing Model object's 'substanceUnits' attribute. If neither the Species object's 'substanceUnits' attribute nor the enclosing Model object's 'substanceUnits' attribute are set, then the unit of that species' quantity is undefined.

          Reference: L3V1 Section 4.6.5

           The <species> with id 'M_accoa_c' does not have a substanceUnits attribute, nor does its enclosing <model>.

        - In situations where a mathematical expression refers to a compartment, species or parameter, it is necessary to know the units of the object to establish unit consistency. In models where the units of an object have not been declared, libSBML does not yet have the functionality to accurately verify the consistency of the units in mathematical expressions referring to that object. 

           The units of the <species> 'M_ade_c' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.

        - If the attribute 'substanceUnits' in a Species object has not been set, then the unit of measurement associated with the species' quantity is determined by the value of the enclosing Model object's 'substanceUnits' attribute. If neither the Species object's 'substanceUnits' attribute nor the enclosing Model object's 'substanceUnits' attribute are set, then the unit of that species' quantity is undefined.

          Reference: L3V1 Section 4.6.5

           The <species> with id 'M_ade_c' does not have a substanceUnits attribute, nor does its enclosing <model>.

        - In situations where a mathematical expression refers to a compartment, species or parameter, it is necessary to know the units of the object to establish unit consistency. In models where the units of an object have not been declared, libSBML does not yet have the functionality to accurately verify the consistency of the units in mathematical expressions referring to that object. 

           The units of the <species> 'M_ade_e' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.

        - If the attribute 'substanceUnits' in a Species object has not been set, then the unit of measurement associated with the species' quantity is determined by the value of the enclosing Model object's 'substanceUnits' attribute. If neither the Species object's 'substanceUnits' attribute nor the enclosing Model object's 'substanceUnits' attribute are set, then the unit of that species' quantity is undefined.

          Reference: L3V1 Section 4.6.5

           The <species> with id 'M_ade_e' does not have a substanceUnits attribute, nor does its enclosing <model>.

        - In situations where a mathematical expression refers to a compartment, species or parameter, it is necessary to know the units of the object to establish unit consistency. In models where the units of an object have not been declared, libSBML does not yet have the functionality to accurately verify the consistency of the units in mathematical expressions referring to that object. 

           The units of the <species> 'M_adn_c' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.

        - If the attribute 'substanceUnits' in a Species object has not been set, then the unit of measurement associated with the species' quantity is determined by the value of the enclosing Model object's 'substanceUnits' attribute. If neither the Species object's 'substanceUnits' attribute nor the enclosing Model object's 'substanceUnits' attribute are set, then the unit of that species' quantity is undefined.

          Reference: L3V1 Section 4.6.5

           The <species> with id 'M_adn_c' does not have a substanceUnits attribute, nor does its enclosing <model>.

        - In situations where a mathematical expression refers to a compartment, species or parameter, it is necessary to know the units of the object to establish unit consistency. In models where the units of an object have not been declared, libSBML does not yet have the functionality to accurately verify the consistency of the units in mathematical expressions referring to that object. 

           The units of the <species> 'M_adn_e' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.

        - If the attribute 'substanceUnits' in a Species object has not been set, then the unit of measurement associated with the species' quantity is determined by the value of the enclosing Model object's 'substanceUnits' attribute. If neither the Species object's 'substanceUnits' attribute nor the enclosing Model object's 'substanceUnits' attribute are set, then the unit of that species' quantity is undefined.

          Reference: L3V1 Section 4.6.5

           The <species> with id 'M_adn_e' does not have a substanceUnits attribute, nor does its enclosing <model>.

        - In situations where a mathematical expression refers to a compartment, species or parameter, it is necessary to know the units of the object to establish unit consistency. In models where the units of an object have not been declared, libSBML does not yet have the functionality to accurately verify the consistency of the units in mathematical expressions referring to that object. 

           The units of the <species> 'M_adp_c' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.

        - If the attribute 'substanceUnits' in a Species object has not been set, then the unit of measurement associated with the species' quantity is determined by the value of the enclosing Model object's 'substanceUnits' attribute. If neither the Species object's 'substanceUnits' attribute nor the enclosing Model object's 'substanceUnits' attribute are set, then the unit of that species' quantity is undefined.

          Reference: L3V1 Section 4.6.5

           The <species> with id 'M_adp_c' does not have a substanceUnits attribute, nor does its enclosing <model>.

        - In situations where a mathematical expression refers to a compartment, species or parameter, it is necessary to know the units of the object to establish unit consistency. In models where the units of an object have not been declared, libSBML does not yet have the functionality to accurately verify the consistency of the units in mathematical expressions referring to that object. 

           The units of the <species> 'M_ahcys_c' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.

        - If the attribute 'substanceUnits' in a Species object has not been set, then the unit of measurement associated with the species' quantity is determined by the value of the enclosing Model object's 'substanceUnits' attribute. If neither the Species object's 'substanceUnits' attribute nor the enclosing Model object's 'substanceUnits' attribute are set, then the unit of that species' quantity is undefined.

          Reference: L3V1 Section 4.6.5

           The <species> with id 'M_ahcys_c' does not have a substanceUnits attribute, nor does its enclosing <model>.

        - In situations where a mathematical expression refers to a compartment, species or parameter, it is necessary to know the units of the object to establish unit consistency. In models where the units of an object have not been declared, libSBML does not yet have the functionality to accurately verify the consistency of the units in mathematical expressions referring to that object. 

           The units of the <species> 'M_akg_c' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.

        - If the attribute 'substanceUnits' in a Species object has not been set, then the unit of measurement associated with the species' quantity is determined by the value of the enclosing Model object's 'substanceUnits' attribute. If neither the Species object's 'substanceUnits' attribute nor the enclosing Model object's 'substanceUnits' attribute are set, then the unit of that species' quantity is undefined.

          Reference: L3V1 Section 4.6.5

           The <species> with id 'M_akg_c' does not have a substanceUnits attribute, nor does its enclosing <model>.

        - In situations where a mathematical expression refers to a compartment, species or parameter, it is necessary to know the units of the object to establish unit consistency. In models where the units of an object have not been declared, libSBML does not yet have the functionality to accurately verify the consistency of the units in mathematical expressions referring to that object. 

           The units of the <species> 'M_akg_e' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.

        - If the attribute 'substanceUnits' in a Species object has not been set, then the unit of measurement associated with the species' quantity is determined by the value of the enclosing Model object's 'substanceUnits' attribute. If neither the Species object's 'substanceUnits' attribute nor the enclosing Model object's 'substanceUnits' attribute are set, then the unit of that species' quantity is undefined.

          Reference: L3V1 Section 4.6.5

           The <species> with id 'M_akg_e' does not have a substanceUnits attribute, nor does its enclosing <model>.

        - In situations where a mathematical expression refers to a compartment, species or parameter, it is necessary to know the units of the object to establish unit consistency. In models where the units of an object have not been declared, libSBML does not yet have the functionality to accurately verify the consistency of the units in mathematical expressions referring to that object. 

           The units of the <species> 'M_ala__L_c' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.

        - If the attribute 'substanceUnits' in a Species object has not been set, then the unit of measurement associated with the species' quantity is determined by the value of the enclosing Model object's 'substanceUnits' attribute. If neither the Species object's 'substanceUnits' attribute nor the enclosing Model object's 'substanceUnits' attribute are set, then the unit of that species' quantity is undefined.

          Reference: L3V1 Section 4.6.5

           The <species> with id 'M_ala__L_c' does not have a substanceUnits attribute, nor does its enclosing <model>.

        - In situations where a mathematical expression refers to a compartment, species or parameter, it is necessary to know the units of the object to establish unit consistency. In models where the units of an object have not been declared, libSBML does not yet have the functionality to accurately verify the consistency of the units in mathematical expressions referring to that object. 

           The units of the <species> 'M_ala__L_e' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.

        - If the attribute 'substanceUnits' in a Species object has not been set, then the unit of measurement associated with the species' quantity is determined by the value of the enclosing Model object's 'substanceUnits' attribute. If neither the Species object's 'substanceUnits' attribute nor the enclosing Model object's 'substanceUnits' attribute are set, then the unit of that species' quantity is undefined.

          Reference: L3V1 Section 4.6.5

           The <species> with id 'M_ala__L_e' does not have a substanceUnits attribute, nor does its enclosing <model>.

        - In situations where a mathematical expression refers to a compartment, species or parameter, it is necessary to know the units of the object to establish unit consistency. In models where the units of an object have not been declared, libSBML does not yet have the functionality to accurately verify the consistency of the units in mathematical expressions referring to that object. 

           The units of the <species> 'M_amet_c' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.

        - If the attribute 'substanceUnits' in a Species object has not been set, then the unit of measurement associated with the species' quantity is determined by the value of the enclosing Model object's 'substanceUnits' attribute. If neither the Species object's 'substanceUnits' attribute nor the enclosing Model object's 'substanceUnits' attribute are set, then the unit of that species' quantity is undefined.

          Reference: L3V1 Section 4.6.5

           The <species> with id 'M_amet_c' does not have a substanceUnits attribute, nor does its enclosing <model>.

        - In situations where a mathematical expression refers to a compartment, species or parameter, it is necessary to know the units of the object to establish unit consistency. In models where the units of an object have not been declared, libSBML does not yet have the functionality to accurately verify the consistency of the units in mathematical expressions referring to that object. 

           The units of the <species> 'M_ametam_c' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.

        - If the attribute 'substanceUnits' in a Species object has not been set, then the unit of measurement associated with the species' quantity is determined by the value of the enclosing Model object's 'substanceUnits' attribute. If neither the Species object's 'substanceUnits' attribute nor the enclosing Model object's 'substanceUnits' attribute are set, then the unit of that species' quantity is undefined.

          Reference: L3V1 Section 4.6.5

           The <species> with id 'M_ametam_c' does not have a substanceUnits attribute, nor does its enclosing <model>.

        - In situations where a mathematical expression refers to a compartment, species or parameter, it is necessary to know the units of the object to establish unit consistency. In models where the units of an object have not been declared, libSBML does not yet have the functionality to accurately verify the consistency of the units in mathematical expressions referring to that object. 

           The units of the <species> 'M_amp_c' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.

        - If the attribute 'substanceUnits' in a Species object has not been set, then the unit of measurement associated with the species' quantity is determined by the value of the enclosing Model object's 'substanceUnits' attribute. If neither the Species object's 'substanceUnits' attribute nor the enclosing Model object's 'substanceUnits' attribute are set, then the unit of that species' quantity is undefined.

          Reference: L3V1 Section 4.6.5

           The <species> with id 'M_amp_c' does not have a substanceUnits attribute, nor does its enclosing <model>.

        - In situations where a mathematical expression refers to a compartment, species or parameter, it is necessary to know the units of the object to establish unit consistency. In models where the units of an object have not been declared, libSBML does not yet have the functionality to accurately verify the consistency of the units in mathematical expressions referring to that object. 

           The units of the <species> 'M_arg__L_c' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.

        - If the attribute 'substanceUnits' in a Species object has not been set, then the unit of measurement associated with the species' quantity is determined by the value of the enclosing Model object's 'substanceUnits' attribute. If neither the Species object's 'substanceUnits' attribute nor the enclosing Model object's 'substanceUnits' attribute are set, then the unit of that species' quantity is undefined.

          Reference: L3V1 Section 4.6.5

           The <species> with id 'M_arg__L_c' does not have a substanceUnits attribute, nor does its enclosing <model>.

        - In situations where a mathematical expression refers to a compartment, species or parameter, it is necessary to know the units of the object to establish unit consistency. In models where the units of an object have not been declared, libSBML does not yet have the functionality to accurately verify the consistency of the units in mathematical expressions referring to that object. 

           The units of the <species> 'M_arg__L_e' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.

        - If the attribute 'substanceUnits' in a Species object has not been set, then the unit of measurement associated with the species' quantity is determined by the value of the enclosing Model object's 'substanceUnits' attribute. If neither the Species object's 'substanceUnits' attribute nor the enclosing Model object's 'substanceUnits' attribute are set, then the unit of that species' quantity is undefined.

          Reference: L3V1 Section 4.6.5

           The <species> with id 'M_arg__L_e' does not have a substanceUnits attribute, nor does its enclosing <model>.

        - In situations where a mathematical expression refers to a compartment, species or parameter, it is necessary to know the units of the object to establish unit consistency. In models where the units of an object have not been declared, libSBML does not yet have the functionality to accurately verify the consistency of the units in mathematical expressions referring to that object. 

           The units of the <species> 'M_ascb__L_c' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.

        - If the attribute 'substanceUnits' in a Species object has not been set, then the unit of measurement associated with the species' quantity is determined by the value of the enclosing Model object's 'substanceUnits' attribute. If neither the Species object's 'substanceUnits' attribute nor the enclosing Model object's 'substanceUnits' attribute are set, then the unit of that species' quantity is undefined.

          Reference: L3V1 Section 4.6.5

           The <species> with id 'M_ascb__L_c' does not have a substanceUnits attribute, nor does its enclosing <model>.

        - In situations where a mathematical expression refers to a compartment, species or parameter, it is necessary to know the units of the object to establish unit consistency. In models where the units of an object have not been declared, libSBML does not yet have the functionality to accurately verify the consistency of the units in mathematical expressions referring to that object. 

           The units of the <species> 'M_ascb__L_e' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.

        - If the attribute 'substanceUnits' in a Species object has not been set, then the unit of measurement associated with the species' quantity is determined by the value of the enclosing Model object's 'substanceUnits' attribute. If neither the Species object's 'substanceUnits' attribute nor the enclosing Model object's 'substanceUnits' attribute are set, then the unit of that species' quantity is undefined.

          Reference: L3V1 Section 4.6.5

           The <species> with id 'M_ascb__L_e' does not have a substanceUnits attribute, nor does its enclosing <model>.

        - In situations where a mathematical expression refers to a compartment, species or parameter, it is necessary to know the units of the object to establish unit consistency. In models where the units of an object have not been declared, libSBML does not yet have the functionality to accurately verify the consistency of the units in mathematical expressions referring to that object. 

           The units of the <species> 'M_asn__L_c' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.

        - If the attribute 'substanceUnits' in a Species object has not been set, then the unit of measurement associated with the species' quantity is determined by the value of the enclosing Model object's 'substanceUnits' attribute. If neither the Species object's 'substanceUnits' attribute nor the enclosing Model object's 'substanceUnits' attribute are set, then the unit of that species' quantity is undefined.

          Reference: L3V1 Section 4.6.5

           The <species> with id 'M_asn__L_c' does not have a substanceUnits attribute, nor does its enclosing <model>.

        - In situations where a mathematical expression refers to a compartment, species or parameter, it is necessary to know the units of the object to establish unit consistency. In models where the units of an object have not been declared, libSBML does not yet have the functionality to accurately verify the consistency of the units in mathematical expressions referring to that object. 

           The units of the <species> 'M_asn__L_e' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.

        - If the attribute 'substanceUnits' in a Species object has not been set, then the unit of measurement associated with the species' quantity is determined by the value of the enclosing Model object's 'substanceUnits' attribute. If neither the Species object's 'substanceUnits' attribute nor the enclosing Model object's 'substanceUnits' attribute are set, then the unit of that species' quantity is undefined.

          Reference: L3V1 Section 4.6.5

           The <species> with id 'M_asn__L_e' does not have a substanceUnits attribute, nor does its enclosing <model>.

        - In situations where a mathematical expression refers to a compartment, species or parameter, it is necessary to know the units of the object to establish unit consistency. In models where the units of an object have not been declared, libSBML does not yet have the functionality to accurately verify the consistency of the units in mathematical expressions referring to that object. 

           The units of the <species> 'M_atp_c' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.

        - If the attribute 'substanceUnits' in a Species object has not been set, then the unit of measurement associated with the species' quantity is determined by the value of the enclosing Model object's 'substanceUnits' attribute. If neither the Species object's 'substanceUnits' attribute nor the enclosing Model object's 'substanceUnits' attribute are set, then the unit of that species' quantity is undefined.

          Reference: L3V1 Section 4.6.5

           The <species> with id 'M_atp_c' does not have a substanceUnits attribute, nor does its enclosing <model>.

        - In situations where a mathematical expression refers to a compartment, species or parameter, it is necessary to know the units of the object to establish unit consistency. In models where the units of an object have not been declared, libSBML does not yet have the functionality to accurately verify the consistency of the units in mathematical expressions referring to that object. 

           The units of the <species> 'M_band_c' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.

        - If the attribute 'substanceUnits' in a Species object has not been set, then the unit of measurement associated with the species' quantity is determined by the value of the enclosing Model object's 'substanceUnits' attribute. If neither the Species object's 'substanceUnits' attribute nor the enclosing Model object's 'substanceUnits' attribute are set, then the unit of that species' quantity is undefined.

          Reference: L3V1 Section 4.6.5

           The <species> with id 'M_band_c' does not have a substanceUnits attribute, nor does its enclosing <model>.

        - In situations where a mathematical expression refers to a compartment, species or parameter, it is necessary to know the units of the object to establish unit consistency. In models where the units of an object have not been declared, libSBML does not yet have the functionality to accurately verify the consistency of the units in mathematical expressions referring to that object. 

           The units of the <species> 'M_bandmt_c' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.

        - If the attribute 'substanceUnits' in a Species object has not been set, then the unit of measurement associated with the species' quantity is determined by the value of the enclosing Model object's 'substanceUnits' attribute. If neither the Species object's 'substanceUnits' attribute nor the enclosing Model object's 'substanceUnits' attribute are set, then the unit of that species' quantity is undefined.

          Reference: L3V1 Section 4.6.5

           The <species> with id 'M_bandmt_c' does not have a substanceUnits attribute, nor does its enclosing <model>.

        - In situations where a mathematical expression refers to a compartment, species or parameter, it is necessary to know the units of the object to establish unit consistency. In models where the units of an object have not been declared, libSBML does not yet have the functionality to accurately verify the consistency of the units in mathematical expressions referring to that object. 

           The units of the <species> 'M_ca2_c' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.

        - If the attribute 'substanceUnits' in a Species object has not been set, then the unit of measurement associated with the species' quantity is determined by the value of the enclosing Model object's 'substanceUnits' attribute. If neither the Species object's 'substanceUnits' attribute nor the enclosing Model object's 'substanceUnits' attribute are set, then the unit of that species' quantity is undefined.

          Reference: L3V1 Section 4.6.5

           The <species> with id 'M_ca2_c' does not have a substanceUnits attribute, nor does its enclosing <model>.

        - In situations where a mathematical expression refers to a compartment, species or parameter, it is necessary to know the units of the object to establish unit consistency. In models where the units of an object have not been declared, libSBML does not yet have the functionality to accurately verify the consistency of the units in mathematical expressions referring to that object. 

           The units of the <species> 'M_ca2_e' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.

        - If the attribute 'substanceUnits' in a Species object has not been set, then the unit of measurement associated with the species' quantity is determined by the value of the enclosing Model object's 'substanceUnits' attribute. If neither the Species object's 'substanceUnits' attribute nor the enclosing Model object's 'substanceUnits' attribute are set, then the unit of that species' quantity is undefined.

          Reference: L3V1 Section 4.6.5

           The <species> with id 'M_ca2_e' does not have a substanceUnits attribute, nor does its enclosing <model>.

        - In situations where a mathematical expression refers to a compartment, species or parameter, it is necessary to know the units of the object to establish unit consistency. In models where the units of an object have not been declared, libSBML does not yet have the functionality to accurately verify the consistency of the units in mathematical expressions referring to that object. 

           The units of the <species> 'M_camp_c' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.

        - If the attribute 'substanceUnits' in a Species object has not been set, then the unit of measurement associated with the species' quantity is determined by the value of the enclosing Model object's 'substanceUnits' attribute. If neither the Species object's 'substanceUnits' attribute nor the enclosing Model object's 'substanceUnits' attribute are set, then the unit of that species' quantity is undefined.

          Reference: L3V1 Section 4.6.5

           The <species> with id 'M_camp_c' does not have a substanceUnits attribute, nor does its enclosing <model>.

        - In situations where a mathematical expression refers to a compartment, species or parameter, it is necessary to know the units of the object to establish unit consistency. In models where the units of an object have not been declared, libSBML does not yet have the functionality to accurately verify the consistency of the units in mathematical expressions referring to that object. 

           The units of the <species> 'M_camp_e' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.

        - If the attribute 'substanceUnits' in a Species object has not been set, then the unit of measurement associated with the species' quantity is determined by the value of the enclosing Model object's 'substanceUnits' attribute. If neither the Species object's 'substanceUnits' attribute nor the enclosing Model object's 'substanceUnits' attribute are set, then the unit of that species' quantity is undefined.

          Reference: L3V1 Section 4.6.5

           The <species> with id 'M_camp_e' does not have a substanceUnits attribute, nor does its enclosing <model>.

        - In situations where a mathematical expression refers to a compartment, species or parameter, it is necessary to know the units of the object to establish unit consistency. In models where the units of an object have not been declared, libSBML does not yet have the functionality to accurately verify the consistency of the units in mathematical expressions referring to that object. 

           The units of the <species> 'M_cit_c' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.

        - If the attribute 'substanceUnits' in a Species object has not been set, then the unit of measurement associated with the species' quantity is determined by the value of the enclosing Model object's 'substanceUnits' attribute. If neither the Species object's 'substanceUnits' attribute nor the enclosing Model object's 'substanceUnits' attribute are set, then the unit of that species' quantity is undefined.

          Reference: L3V1 Section 4.6.5

           The <species> with id 'M_cit_c' does not have a substanceUnits attribute, nor does its enclosing <model>.

        - In situations where a mathematical expression refers to a compartment, species or parameter, it is necessary to know the units of the object to establish unit consistency. In models where the units of an object have not been declared, libSBML does not yet have the functionality to accurately verify the consistency of the units in mathematical expressions referring to that object. 

           The units of the <species> 'M_cit_e' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.

        - If the attribute 'substanceUnits' in a Species object has not been set, then the unit of measurement associated with the species' quantity is determined by the value of the enclosing Model object's 'substanceUnits' attribute. If neither the Species object's 'substanceUnits' attribute nor the enclosing Model object's 'substanceUnits' attribute are set, then the unit of that species' quantity is undefined.

          Reference: L3V1 Section 4.6.5

           The <species> with id 'M_cit_e' does not have a substanceUnits attribute, nor does its enclosing <model>.

        - In situations where a mathematical expression refers to a compartment, species or parameter, it is necessary to know the units of the object to establish unit consistency. In models where the units of an object have not been declared, libSBML does not yet have the functionality to accurately verify the consistency of the units in mathematical expressions referring to that object. 

           The units of the <species> 'M_cl_c' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.

        - If the attribute 'substanceUnits' in a Species object has not been set, then the unit of measurement associated with the species' quantity is determined by the value of the enclosing Model object's 'substanceUnits' attribute. If neither the Species object's 'substanceUnits' attribute nor the enclosing Model object's 'substanceUnits' attribute are set, then the unit of that species' quantity is undefined.

          Reference: L3V1 Section 4.6.5

           The <species> with id 'M_cl_c' does not have a substanceUnits attribute, nor does its enclosing <model>.

        - In situations where a mathematical expression refers to a compartment, species or parameter, it is necessary to know the units of the object to establish unit consistency. In models where the units of an object have not been declared, libSBML does not yet have the functionality to accurately verify the consistency of the units in mathematical expressions referring to that object. 

           The units of the <species> 'M_cl_e' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.

        - If the attribute 'substanceUnits' in a Species object has not been set, then the unit of measurement associated with the species' quantity is determined by the value of the enclosing Model object's 'substanceUnits' attribute. If neither the Species object's 'substanceUnits' attribute nor the enclosing Model object's 'substanceUnits' attribute are set, then the unit of that species' quantity is undefined.

          Reference: L3V1 Section 4.6.5

           The <species> with id 'M_cl_e' does not have a substanceUnits attribute, nor does its enclosing <model>.

        - In situations where a mathematical expression refers to a compartment, species or parameter, it is necessary to know the units of the object to establish unit consistency. In models where the units of an object have not been declared, libSBML does not yet have the functionality to accurately verify the consistency of the units in mathematical expressions referring to that object. 

           The units of the <species> 'M_co2_c' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.

        - If the attribute 'substanceUnits' in a Species object has not been set, then the unit of measurement associated with the species' quantity is determined by the value of the enclosing Model object's 'substanceUnits' attribute. If neither the Species object's 'substanceUnits' attribute nor the enclosing Model object's 'substanceUnits' attribute are set, then the unit of that species' quantity is undefined.

          Reference: L3V1 Section 4.6.5

           The <species> with id 'M_co2_c' does not have a substanceUnits attribute, nor does its enclosing <model>.

        - In situations where a mathematical expression refers to a compartment, species or parameter, it is necessary to know the units of the object to establish unit consistency. In models where the units of an object have not been declared, libSBML does not yet have the functionality to accurately verify the consistency of the units in mathematical expressions referring to that object. 

           The units of the <species> 'M_co2_e' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.

        - If the attribute 'substanceUnits' in a Species object has not been set, then the unit of measurement associated with the species' quantity is determined by the value of the enclosing Model object's 'substanceUnits' attribute. If neither the Species object's 'substanceUnits' attribute nor the enclosing Model object's 'substanceUnits' attribute are set, then the unit of that species' quantity is undefined.

          Reference: L3V1 Section 4.6.5

           The <species> with id 'M_co2_e' does not have a substanceUnits attribute, nor does its enclosing <model>.

        - In situations where a mathematical expression refers to a compartment, species or parameter, it is necessary to know the units of the object to establish unit consistency. In models where the units of an object have not been declared, libSBML does not yet have the functionality to accurately verify the consistency of the units in mathematical expressions referring to that object. 

           The units of the <species> 'M_coa_c' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.

        - If the attribute 'substanceUnits' in a Species object has not been set, then the unit of measurement associated with the species' quantity is determined by the value of the enclosing Model object's 'substanceUnits' attribute. If neither the Species object's 'substanceUnits' attribute nor the enclosing Model object's 'substanceUnits' attribute are set, then the unit of that species' quantity is undefined.

          Reference: L3V1 Section 4.6.5

           The <species> with id 'M_coa_c' does not have a substanceUnits attribute, nor does its enclosing <model>.

        - In situations where a mathematical expression refers to a compartment, species or parameter, it is necessary to know the units of the object to establish unit consistency. In models where the units of an object have not been declared, libSBML does not yet have the functionality to accurately verify the consistency of the units in mathematical expressions referring to that object. 

           The units of the <species> 'M_cys__L_c' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.

        - If the attribute 'substanceUnits' in a Species object has not been set, then the unit of measurement associated with the species' quantity is determined by the value of the enclosing Model object's 'substanceUnits' attribute. If neither the Species object's 'substanceUnits' attribute nor the enclosing Model object's 'substanceUnits' attribute are set, then the unit of that species' quantity is undefined.

          Reference: L3V1 Section 4.6.5

           The <species> with id 'M_cys__L_c' does not have a substanceUnits attribute, nor does its enclosing <model>.

        - In situations where a mathematical expression refers to a compartment, species or parameter, it is necessary to know the units of the object to establish unit consistency. In models where the units of an object have not been declared, libSBML does not yet have the functionality to accurately verify the consistency of the units in mathematical expressions referring to that object. 

           The units of the <species> 'M_cys__L_e' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.

        - If the attribute 'substanceUnits' in a Species object has not been set, then the unit of measurement associated with the species' quantity is determined by the value of the enclosing Model object's 'substanceUnits' attribute. If neither the Species object's 'substanceUnits' attribute nor the enclosing Model object's 'substanceUnits' attribute are set, then the unit of that species' quantity is undefined.

          Reference: L3V1 Section 4.6.5

           The <species> with id 'M_cys__L_e' does not have a substanceUnits attribute, nor does its enclosing <model>.

        - In situations where a mathematical expression refers to a compartment, species or parameter, it is necessary to know the units of the object to establish unit consistency. In models where the units of an object have not been declared, libSBML does not yet have the functionality to accurately verify the consistency of the units in mathematical expressions referring to that object. 

           The units of the <species> 'M_dhap_c' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.

        - If the attribute 'substanceUnits' in a Species object has not been set, then the unit of measurement associated with the species' quantity is determined by the value of the enclosing Model object's 'substanceUnits' attribute. If neither the Species object's 'substanceUnits' attribute nor the enclosing Model object's 'substanceUnits' attribute are set, then the unit of that species' quantity is undefined.

          Reference: L3V1 Section 4.6.5

           The <species> with id 'M_dhap_c' does not have a substanceUnits attribute, nor does its enclosing <model>.

        - In situations where a mathematical expression refers to a compartment, species or parameter, it is necessary to know the units of the object to establish unit consistency. In models where the units of an object have not been declared, libSBML does not yet have the functionality to accurately verify the consistency of the units in mathematical expressions referring to that object. 

           The units of the <species> 'M_dhdascb_c' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.

        - If the attribute 'substanceUnits' in a Species object has not been set, then the unit of measurement associated with the species' quantity is determined by the v ...
biosimulators-daemon commented 3 years ago 
- After correcting your simulator, please edit the first block of this issue to re-initiate this validation.
- 
- The complete log of your validation/submission job, including further information about the failure, is available for 90 days [here](https://github.com/biosimulators/Biosimulators/actions/runs/1144119594). The results of the validation of your image will also be available shortly as a JSON file. A link to this file will be available from the "Artifacts" section at the bottom of [this page](https://github.com/biosimulators/Biosimulators/actions/runs/1144119594).