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biosimulators / Biosimulators

Registry of containerized biosimulation tools that support a standard command-line interface
https://biosimulators.org
MIT License
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Submit MASSpy 0.1.6 #557

Closed biosimulators-daemon closed 2 years ago

biosimulators-daemon commented 2 years ago

id: masspy version: "0.1.6" specificationsUrl: https://raw.githubusercontent.com/biosimulators/Biosimulators_MASSpy/efdf691dc4230a6880b33fc6fd926230d81aa6e1/biosimulators.json specificationsPatch: version: "0.1.6" image: url: ghcr.io/biosimulators/biosimulators_masspy/masspy:0.1.6 digest: "sha256:eb21d48b8033e0de75c4674458b476d72ff3f82c7f1066d63417608fd430e100" validateImage: true commitSimulator: true

biosimulators-daemon commented 2 years ago

Thank you @biosimulators-daemon for your submission to the BioSimulators simulator validation/submission system!

The BioSimulators validator bot is validating the specifications of your simulator, validating your Docker image, and committing your simulator to the BioSimulators registry.

We will discuss any concerns with your submission in this issue.

A complete log of your simulator submission job will be available for 90 days here. The results of the validation of your tool will also be saved as a JSON file. A link to this file will be available for 90 days from the "Artifacts" section at the bottom of this page.

biosimulators-daemon commented 2 years ago

The specifications of your simulator is valid!

biosimulators-daemon commented 2 years ago

Summary of tests

biosimulators-daemon commented 2 years ago

Warnings

docker_image.DeclaresSupportedEnvironmentVariables (0.3 s)
Test if a Docker image declares the environment variables that is supports Warnings: ``` Docker images for simulation tools should declare the environment variables that they support. The Docker image does not declare the following standard environment variables recognized by BioSimulators: - 'ALGORITHM_SUBSTITUTION_POLICY' - 'BUNDLE_OUTPUTS' - 'COLLECT_COMBINE_ARCHIVE_RESULTS' - 'COLLECT_SED_DOCUMENT_RESULTS' - 'DEBUG' - 'H5_REPORTS_PATH' - 'KEEP_INDIVIDUAL_OUTPUTS' - 'LOG_PATH' - 'OMEX_METADATA_INPUT_FORMAT' - 'OMEX_METADATA_OUTPUT_FORMAT' - 'OMEX_METADATA_SCHEMA' - 'PLOTS_PATH' - 'REPORTS_PATH' - 'REPORT_FORMATS' - 'SAVE_PLOT_DATA' - 'VALIDATE_IMAGES' - 'VALIDATE_IMPORTED_MODEL_FILES' - 'VALIDATE_OMEX_MANIFESTS' - 'VALIDATE_OMEX_METADATA' - 'VALIDATE_RESULTS' - 'VALIDATE_SEDML' - 'VALIDATE_SEDML_MODELS' - 'VIZ_FORMATS' If the simulation tool implements these variables, they should be declared in the Dockerfile for the Docker image for the simulator. Note, support for these environment variables is optional. Simulation tools are not required to support these variables. ``` Log: None
docker_image.HasBioContainersLabels (0.3 s)
Test that a Docker image has BioContainers labels with metadata about the image Warnings: ``` Docker images are encouraged to have the following BioContainers labels: extra.identifiers.biotools ``` Log: None
biosimulators-daemon commented 2 years ago

Skips

published_project.SimulatorCanExecutePublishedProject:bngl/Dolan-PLoS-Comput-Biol-2015-NHEJ (0.0 s)
Required model formats and simulation algorithms for SED tasks: * Format: [`format_3972`](https://www.ebi.ac.uk/ols/ontologies/edam/terms?iri=http%3A%2F%2Fedamontology.org%2Fformat_3972) Algorithm: [`KISAO_0000263`](https://www.ebi.ac.uk/ols/ontologies/kisao/terms?iri=http%3A%2F%2Fwww.biomodels.net%2Fkisao%2FKISAO%23KISAO_0000263) Reason for skip: ``` Case requires model formats format_3972 and simulation algorithms KISAO_0000263 ``` Log: None
published_project.SimulatorCanExecutePublishedProject:bngl/test-bngl (0.0 s)
Required model formats and simulation algorithms for SED tasks: * Format: [`format_3972`](https://www.ebi.ac.uk/ols/ontologies/edam/terms?iri=http%3A%2F%2Fedamontology.org%2Fformat_3972) Algorithm: [`KISAO_0000019`](https://www.ebi.ac.uk/ols/ontologies/kisao/terms?iri=http%3A%2F%2Fwww.biomodels.net%2Fkisao%2FKISAO%23KISAO_0000019) Reason for skip: ``` Case requires model formats format_3972 and simulation algorithms KISAO_0000019 ``` Log: None
published_project.SimulatorCanExecutePublishedProject:cellml/Elowitz-Nature-2000-Repressilator (0.0 s)
Required model formats and simulation algorithms for SED tasks: * Format: [`format_3240`](https://www.ebi.ac.uk/ols/ontologies/edam/terms?iri=http%3A%2F%2Fedamontology.org%2Fformat_3240) Algorithm: [`KISAO_0000019`](https://www.ebi.ac.uk/ols/ontologies/kisao/terms?iri=http%3A%2F%2Fwww.biomodels.net%2Fkisao%2FKISAO%23KISAO_0000019) Reason for skip: ``` Case requires model formats format_3240 and simulation algorithms KISAO_0000019 ``` Log: None
published_project.SimulatorCanExecutePublishedProject:cellml/Lorenz-system (0.0 s)
Required model formats and simulation algorithms for SED tasks: * Format: [`format_3240`](https://www.ebi.ac.uk/ols/ontologies/edam/terms?iri=http%3A%2F%2Fedamontology.org%2Fformat_3240) Algorithm: [`KISAO_0000019`](https://www.ebi.ac.uk/ols/ontologies/kisao/terms?iri=http%3A%2F%2Fwww.biomodels.net%2Fkisao%2FKISAO%23KISAO_0000019) Reason for skip: ``` Case requires model formats format_3240 and simulation algorithms KISAO_0000019 ``` Log: None
published_project.SimulatorCanExecutePublishedProject:neuroml-lems/Hodgkin-Huxley-cell-CVODE (0.0 s)
Required model formats and simulation algorithms for SED tasks: * Format: [`format_9004`](https://www.ebi.ac.uk/ols/ontologies/edam/terms?iri=http%3A%2F%2Fedamontology.org%2Fformat_9004) Algorithm: [`KISAO_0000019`](https://www.ebi.ac.uk/ols/ontologies/kisao/terms?iri=http%3A%2F%2Fwww.biomodels.net%2Fkisao%2FKISAO%23KISAO_0000019) Reason for skip: ``` Case requires model formats format_9004 and simulation algorithms KISAO_0000019 ``` Log: None
published_project.SimulatorCanExecutePublishedProject:neuroml-lems/Hodgkin-Huxley-cell-Euler (0.0 s)
Required model formats and simulation algorithms for SED tasks: * Format: [`format_9004`](https://www.ebi.ac.uk/ols/ontologies/edam/terms?iri=http%3A%2F%2Fedamontology.org%2Fformat_9004) Algorithm: [`KISAO_0000030`](https://www.ebi.ac.uk/ols/ontologies/kisao/terms?iri=http%3A%2F%2Fwww.biomodels.net%2Fkisao%2FKISAO%23KISAO_0000030) Reason for skip: ``` Case requires model formats format_9004 and simulation algorithms KISAO_0000030 ``` Log: None
published_project.SimulatorCanExecutePublishedProject:rba/Escherichia-coli-K12-WT (0.0 s)
Required model formats and simulation algorithms for SED tasks: * Format: [`format_9012`](https://www.ebi.ac.uk/ols/ontologies/edam/terms?iri=http%3A%2F%2Fedamontology.org%2Fformat_9012) Algorithm: [`KISAO_0000669`](https://www.ebi.ac.uk/ols/ontologies/kisao/terms?iri=http%3A%2F%2Fwww.biomodels.net%2Fkisao%2FKISAO%23KISAO_0000669) Reason for skip: ``` Case requires model formats format_9012 and simulation algorithms KISAO_0000669 ``` Log: None
published_project.SimulatorCanExecutePublishedProject:sbml-core/Caravagna-J-Theor-Biol-2010-tumor-suppressive-oscillations (0.0 s)
Required model formats and simulation algorithms for SED tasks: * Format: [`format_2585`](https://www.ebi.ac.uk/ols/ontologies/edam/terms?iri=http%3A%2F%2Fedamontology.org%2Fformat_2585) Algorithm: [`KISAO_0000019`](https://www.ebi.ac.uk/ols/ontologies/kisao/terms?iri=http%3A%2F%2Fwww.biomodels.net%2Fkisao%2FKISAO%23KISAO_0000019) Reason for skip: ``` Case requires model formats format_2585 and simulation algorithms KISAO_0000019 ``` Log: None
published_project.SimulatorCanExecutePublishedProject:sbml-core/Ciliberto-J-Cell-Biol-2003-morphogenesis-checkpoint-Fehlberg (0.0 s)
Required model formats and simulation algorithms for SED tasks: * Format: [`format_2585`](https://www.ebi.ac.uk/ols/ontologies/edam/terms?iri=http%3A%2F%2Fedamontology.org%2Fformat_2585) Algorithm: [`KISAO_0000086`](https://www.ebi.ac.uk/ols/ontologies/kisao/terms?iri=http%3A%2F%2Fwww.biomodels.net%2Fkisao%2FKISAO%23KISAO_0000086) Reason for skip: ``` Case requires model formats format_2585 and simulation algorithms KISAO_0000086 ``` Log: None
published_project.SimulatorCanExecutePublishedProject:sbml-core/Ciliberto-J-Cell-Biol-2003-morphogenesis-checkpoint-continuous (0.0 s)
Required model formats and simulation algorithms for SED tasks: * Format: [`format_2585`](https://www.ebi.ac.uk/ols/ontologies/edam/terms?iri=http%3A%2F%2Fedamontology.org%2Fformat_2585) Algorithm: [`KISAO_0000019`](https://www.ebi.ac.uk/ols/ontologies/kisao/terms?iri=http%3A%2F%2Fwww.biomodels.net%2Fkisao%2FKISAO%23KISAO_0000019) Reason for skip: ``` Case requires model formats format_2585 and simulation algorithms KISAO_0000019 ``` Log: None
published_project.SimulatorCanExecutePublishedProject:sbml-core/Edelstein-Biol-Cybern-1996-Nicotinic-excitation (0.0 s)
Required model formats and simulation algorithms for SED tasks: * Format: [`format_2585`](https://www.ebi.ac.uk/ols/ontologies/edam/terms?iri=http%3A%2F%2Fedamontology.org%2Fformat_2585) Algorithm: [`KISAO_0000088`](https://www.ebi.ac.uk/ols/ontologies/kisao/terms?iri=http%3A%2F%2Fwww.biomodels.net%2Fkisao%2FKISAO%23KISAO_0000088) Reason for skip: ``` Case requires model formats format_2585 and simulation algorithms KISAO_0000088 ``` Log: None
published_project.SimulatorCanExecutePublishedProject:sbml-core/Elowitz-Nature-2000-Repressilator (0.0 s)
Required model formats and simulation algorithms for SED tasks: * Format: [`format_2585`](https://www.ebi.ac.uk/ols/ontologies/edam/terms?iri=http%3A%2F%2Fedamontology.org%2Fformat_2585) Algorithm: [`KISAO_0000019`](https://www.ebi.ac.uk/ols/ontologies/kisao/terms?iri=http%3A%2F%2Fwww.biomodels.net%2Fkisao%2FKISAO%23KISAO_0000019) Reason for skip: ``` Case requires model formats format_2585 and simulation algorithms KISAO_0000019 ``` Log: None
published_project.SimulatorCanExecutePublishedProject:sbml-core/Parmar-BMC-Syst-Biol-2017-iron-distribution (0.0 s)
Required model formats and simulation algorithms for SED tasks: * Format: [`format_2585`](https://www.ebi.ac.uk/ols/ontologies/edam/terms?iri=http%3A%2F%2Fedamontology.org%2Fformat_2585) Algorithm: [`KISAO_000019`](https://www.ebi.ac.uk/ols/ontologies/kisao/terms?iri=http%3A%2F%2Fwww.biomodels.net%2Fkisao%2FKISAO%23KISAO_000019) Reason for skip: ``` Case requires model formats format_2585 and simulation algorithms KISAO_000019 ``` Log: None
published_project.SimulatorCanExecutePublishedProject:sbml-core/Szymanska-J-Theor-Biol-2009-HSP-synthesis (0.0 s)
Required model formats and simulation algorithms for SED tasks: * Format: [`format_2585`](https://www.ebi.ac.uk/ols/ontologies/edam/terms?iri=http%3A%2F%2Fedamontology.org%2Fformat_2585) Algorithm: [`KISAO_0000496`](https://www.ebi.ac.uk/ols/ontologies/kisao/terms?iri=http%3A%2F%2Fwww.biomodels.net%2Fkisao%2FKISAO%23KISAO_0000496) Reason for skip: ``` Case requires model formats format_2585 and simulation algorithms KISAO_0000496 ``` Log: None
published_project.SimulatorCanExecutePublishedProject:sbml-core/Tomida-EMBO-J-2003-NFAT-translocation (0.0 s)
Required model formats and simulation algorithms for SED tasks: * Format: [`format_2585`](https://www.ebi.ac.uk/ols/ontologies/edam/terms?iri=http%3A%2F%2Fedamontology.org%2Fformat_2585) Algorithm: [`KISAO_0000560`](https://www.ebi.ac.uk/ols/ontologies/kisao/terms?iri=http%3A%2F%2Fwww.biomodels.net%2Fkisao%2FKISAO%23KISAO_0000560) Reason for skip: ``` Case requires model formats format_2585 and simulation algorithms KISAO_0000560 ``` Log: None
published_project.SimulatorCanExecutePublishedProject:sbml-core/Varusai-Sci-Rep-2018-mTOR-signaling-LSODA-LSODAR-SBML (0.0 s)
Required model formats and simulation algorithms for SED tasks: * Format: [`format_2585`](https://www.ebi.ac.uk/ols/ontologies/edam/terms?iri=http%3A%2F%2Fedamontology.org%2Fformat_2585) Algorithm: [`KISAO_0000560`](https://www.ebi.ac.uk/ols/ontologies/kisao/terms?iri=http%3A%2F%2Fwww.biomodels.net%2Fkisao%2FKISAO%23KISAO_0000560) Reason for skip: ``` Case requires model formats format_2585 and simulation algorithms KISAO_0000560 ``` Log: None
published_project.SimulatorCanExecutePublishedProject:sbml-core/Vilar-PNAS-2002-minimal-circardian-clock (0.0 s)
Required model formats and simulation algorithms for SED tasks: * Format: [`format_2585`](https://www.ebi.ac.uk/ols/ontologies/edam/terms?iri=http%3A%2F%2Fedamontology.org%2Fformat_2585) Algorithm: [`KISAO_0000019`](https://www.ebi.ac.uk/ols/ontologies/kisao/terms?iri=http%3A%2F%2Fwww.biomodels.net%2Fkisao%2FKISAO%23KISAO_0000019) * Format: [`format_2585`](https://www.ebi.ac.uk/ols/ontologies/edam/terms?iri=http%3A%2F%2Fedamontology.org%2Fformat_2585) Algorithm: [`KISAO_0000027`](https://www.ebi.ac.uk/ols/ontologies/kisao/terms?iri=http%3A%2F%2Fwww.biomodels.net%2Fkisao%2FKISAO%23KISAO_0000027) Reason for skip: ``` Case requires model formats format_2585 and simulation algorithms KISAO_0000019, KISAO_0000027 ``` Log: None
published_project.SimulatorCanExecutePublishedProject:sbml-core/Vilar-PNAS-2002-minimal-circardian-clock-continuous (0.0 s)
Required model formats and simulation algorithms for SED tasks: * Format: [`format_2585`](https://www.ebi.ac.uk/ols/ontologies/edam/terms?iri=http%3A%2F%2Fedamontology.org%2Fformat_2585) Algorithm: [`KISAO_0000019`](https://www.ebi.ac.uk/ols/ontologies/kisao/terms?iri=http%3A%2F%2Fwww.biomodels.net%2Fkisao%2FKISAO%23KISAO_0000019) Reason for skip: ``` Case requires model formats format_2585 and simulation algorithms KISAO_0000019 ``` Log: None
published_project.SimulatorCanExecutePublishedProject:sbml-core/Vilar-PNAS-2002-minimal-circardian-clock-discrete-NRM (0.0 s)
Required model formats and simulation algorithms for SED tasks: * Format: [`format_2585`](https://www.ebi.ac.uk/ols/ontologies/edam/terms?iri=http%3A%2F%2Fedamontology.org%2Fformat_2585) Algorithm: [`KISAO_0000027`](https://www.ebi.ac.uk/ols/ontologies/kisao/terms?iri=http%3A%2F%2Fwww.biomodels.net%2Fkisao%2FKISAO%23KISAO_0000027) Reason for skip: ``` Case requires model formats format_2585 and simulation algorithms KISAO_0000027 ``` Log: None
published_project.SimulatorCanExecutePublishedProject:sbml-core/Vilar-PNAS-2002-minimal-circardian-clock-discrete-SSA (0.0 s)
Required model formats and simulation algorithms for SED tasks: * Format: [`format_2585`](https://www.ebi.ac.uk/ols/ontologies/edam/terms?iri=http%3A%2F%2Fedamontology.org%2Fformat_2585) Algorithm: [`KISAO_0000029`](https://www.ebi.ac.uk/ols/ontologies/kisao/terms?iri=http%3A%2F%2Fwww.biomodels.net%2Fkisao%2FKISAO%23KISAO_0000029) Reason for skip: ``` Case requires model formats format_2585 and simulation algorithms KISAO_0000029 ``` Log: None
published_project.SimulatorCanExecutePublishedProject:sbml-fbc/Escherichia-coli-core-metabolism (0.0 s)
Required model formats and simulation algorithms for SED tasks: * Format: [`format_2585`](https://www.ebi.ac.uk/ols/ontologies/edam/terms?iri=http%3A%2F%2Fedamontology.org%2Fformat_2585) Algorithm: [`KISAO_0000437`](https://www.ebi.ac.uk/ols/ontologies/kisao/terms?iri=http%3A%2F%2Fwww.biomodels.net%2Fkisao%2FKISAO%23KISAO_0000437) Reason for skip: ``` Case requires model formats format_2585 and simulation algorithms KISAO_0000437 ``` Log: None
published_project.SimulatorCanExecutePublishedProject:sbml-qual/Chaouiya-BMC-Syst-Biol-2013-EGF-TNFa-signaling (0.0 s)
Required model formats and simulation algorithms for SED tasks: * Format: [`format_2585`](https://www.ebi.ac.uk/ols/ontologies/edam/terms?iri=http%3A%2F%2Fedamontology.org%2Fformat_2585) Algorithm: [`KISAO_0000449`](https://www.ebi.ac.uk/ols/ontologies/kisao/terms?iri=http%3A%2F%2Fwww.biomodels.net%2Fkisao%2FKISAO%23KISAO_0000449) Reason for skip: ``` Case requires model formats format_2585 and simulation algorithms KISAO_0000449 ``` Log: None
published_project.SimulatorCanExecutePublishedProject:sbml-qual/Irons-J-Theor-Biol-2009-yeast-cell-cycle (0.0 s)
Required model formats and simulation algorithms for SED tasks: * Format: [`format_2585`](https://www.ebi.ac.uk/ols/ontologies/edam/terms?iri=http%3A%2F%2Fedamontology.org%2Fformat_2585) Algorithm: [`KISAO_0000449`](https://www.ebi.ac.uk/ols/ontologies/kisao/terms?iri=http%3A%2F%2Fwww.biomodels.net%2Fkisao%2FKISAO%23KISAO_0000449) Reason for skip: ``` Case requires model formats format_2585 and simulation algorithms KISAO_0000449 ``` Log: None
published_project.SimulatorCanExecutePublishedProject:smoldyn/Lotka-Volterra (0.0 s)
Required model formats and simulation algorithms for SED tasks: * Format: [`format_9001`](https://www.ebi.ac.uk/ols/ontologies/edam/terms?iri=http%3A%2F%2Fedamontology.org%2Fformat_9001) Algorithm: [`KISAO_0000057`](https://www.ebi.ac.uk/ols/ontologies/kisao/terms?iri=http%3A%2F%2Fwww.biomodels.net%2Fkisao%2FKISAO%23KISAO_0000057) Reason for skip: ``` Case requires model formats format_9001 and simulation algorithms KISAO_0000057 ``` Log: None
published_project.SimulatorCanExecutePublishedProject:xpp/Wu-Biochem-Pharmacol-2006-pituitary-GH3-cells (0.0 s)
Required model formats and simulation algorithms for SED tasks: * Format: [`format_9010`](https://www.ebi.ac.uk/ols/ontologies/edam/terms?iri=http%3A%2F%2Fedamontology.org%2Fformat_9010) Algorithm: [`KISAO_0000019`](https://www.ebi.ac.uk/ols/ontologies/kisao/terms?iri=http%3A%2F%2Fwww.biomodels.net%2Fkisao%2FKISAO%23KISAO_0000019) Reason for skip: ``` Case requires model formats format_9010 and simulation algorithms KISAO_0000019 ``` Log: None
sedml.SimulatorProducesLinear3DPlots (0.3 s)
Test that a simulator produces linear 3D plots Reason for skip: ``` No curated COMBINE/OMEX archives are available to generate archives for testing ``` Log: None
sedml.SimulatorProducesLogarithmic3DPlots (0.3 s)
Test that a simulator produces logarithmic 3D plots Reason for skip: ``` No curated COMBINE/OMEX archives are available to generate archives for testing ``` Log: None
sedml.SimulatorProducesReportsWithCuratedNumberOfDimensions (0.4 s)
Test that that the curated number of output dimensions matches the actual number of output dimensions Reason for skip: ``` No curated COMBINE/OMEX archives are available to generate archives for testing ``` Log: None
sedml.SimulatorSupportsComputeModelChanges (0.9 s)
Test that a simulator supports compute model changes Reason for skip: ``` The SED document is invalid. - Model `model` is invalid. - The changes of the model are invalid. - Change 969 is invalid. - One or more namespaces required for target `/sbml:sbml[1]/sbml:model[1]/sbml:listOfSpecies[1]/sbml:species[169]/@fbc:charge` are not defined. Only the following namespaces are defined for the target: `sbml`. - Variable `__var_969` is invalid. - One or more namespaces required for target `/sbml:sbml[1]/sbml:model[1]/sbml:listOfSpecies[1]/sbml:species[169]/@fbc:charge` are not defined. Only the following namespaces are defined for the target: `sbml`. - Change 971 is invalid. - One or more namespaces required for target `/sbml:sbml[1]/sbml:model[1]/sbml:listOfSpecies[1]/sbml:species[168]/@fbc:charge` are not defined. Only the following namespaces are defined for the target: `sbml`. - Variable `__var_971` is invalid. - One or more namespaces required for target `/sbml:sbml[1]/sbml:model[1]/sbml:listOfSpecies[1]/sbml:species[168]/@fbc:charge` are not defined. Only the following namespaces are defined for the target: `sbml`. - Change 973 is invalid. - One or more namespaces required for target `/sbml:sbml[1]/sbml:model[1]/sbml:listOfSpecies[1]/sbml:species[167]/@fbc:charge` are not defined. Only the following namespaces are defined for the target: `sbml`. - Variable `__var_973` is invalid. - One or more namespaces required for target `/sbml:sbml[1]/sbml:model[1]/sbml:listOfSpecies[1]/sbml:species[167]/@fbc:charge` are not defined. Only the following namespaces are defined for the target: `sbml`. - Change 975 is invalid. - One or more namespaces required for target `/sbml:sbml[1]/sbml:model[1]/sbml:listOfSpecies[1]/sbml:species[166]/@fbc:charge` are not defined. Only the following namespaces are defined for the target: `sbml`. - Variable `__var_975` is invalid. - One or more namespaces required for target `/sbml:sbml[1]/sbml:model[1]/sbml:listOfSpecies[1]/sbml:species[166]/@fbc:charge` are not defined. Only the following namespaces are defined for the target: `sbml`. - Change 977 is invalid. - One or more namespaces required for target `/sbml:sbml[1]/sbml:model[1]/sbml:listOfSpecies[1]/sbml:species[165]/@fbc:charge` are not defined. Only the following namespaces are defined for the target: `sbml`. - Variable `__var_977` is invalid. - One or more namespaces required for target `/sbml:sbml[1]/sbml:model[1]/sbml:listOfSpecies[1]/sbml:species[165]/@fbc:charge` are not defined. Only the following namespaces are defined for the target: `sbml`. - Change 979 is invalid. - One or more namespaces required for target `/sbml:sbml[1]/sbml:model[1]/sbml:listOfSpecies[1]/sbml:species[164]/@fbc:charge` are not defined. Only the following namespaces are defined for the target: `sbml`. - Variable `__var_979` is invalid. - One or more namespaces required for target `/sbml:sbml[1]/sbml:model[1]/sbml:listOfSpecies[1]/sbml:species[164]/@fbc:charge` are not defined. Only the following namespaces are defined for the target: `sbml`. - Change 981 is invalid. - One or more namespaces required for target `/sbml:sbml[1]/sbml:model[1]/sbml:listOfSpecies[1]/sbml:species[163]/@fbc:charge` are not defined. Only the following namespaces are defined for the target: `sbml`. - Variable `__var_981` is invalid. - One or more namespaces required for target `/sbml:sbml[1]/sbml:model[1]/sbml:listOfSpecies[1]/sbml:species[163]/@fbc:charge` are not defined. Only the following namespaces are defined for the target: `sbml`. - Change 983 is invalid. - One or more namespaces required for target `/sbml:sbml[1]/sbml:model[1]/sbml:listOfSpecies[1]/sbml:species[162]/@fbc:charge` are not defined. Only the following namespaces are defined for the target: `sbml`. - Variable `__var_983` is invalid. - One or more namespaces required for target `/sbml:sbml[1]/sbml:model[1]/sbml:listOfSpecies[1]/sbml:species[162]/@fbc:charge` are not defined. Only the following namespaces are defined for the target: `sbml`. - Change 985 is invalid. - One or more namespaces required for target `/sbml:sbml[1]/sbml:model[1]/sbml:listOfSpecies[1]/sbml:species[161]/@fbc:charge` are not defined. Only the following namespaces are defined for the target: `sbml`. - Variable `__var_985` is invalid. - One or more namespaces required for target `/sbml:sbml[1]/sbml:model[1]/sbml:listOfSpecies[1]/sbml:species[161]/@fbc:charge` are not defined. Only the following namespaces are defined for the target: `sbml`. - Change 987 is invalid. - One or more namespaces required for target `/sbml:sbml[1]/sbml:model[1]/sbml:listOfSpecies[1]/sbml:species[160]/@fbc:charge` are not defined. Only the following namespaces are defined for the target: `sbml`. - Variable `__var_987` is invalid. - One or more namespaces required for target `/sbml:sbml[1]/sbml:model[1]/sbml:listOfSpecies[1]/sbml:species[160]/@fbc:charge` are not defined. Only the following namespaces are defined for the target: `sbml`. - Change 989 is invalid. - One or more namespaces required for target `/sbml:sbml[1]/sbml:model[1]/sbml:listOfSpecies[1]/sbml:species[159]/@fbc:charge` are not defined. Only the following namespaces are defined for the target: `sbml`. - Variable `__var_989` is invalid. - One or more namespaces required for target `/sbml:sbml[1]/sbml:model[1]/sbml:listOfSpecies[1]/sbml:species[159]/@fbc:charge` are not defined. Only the following namespaces are defined for the target: `sbml`. - Change 991 is invalid. - One or more namespaces required for target `/sbml:sbml[1]/sbml:model[1]/sbml:listOfSpecies[1]/sbml:species[158]/@fbc:charge` are not defined. Only the following namespaces are defined for the target: `sbml`. - Variable `__var_991` is invalid. - One or more namespaces required for target `/sbml:sbml[1]/sbml:model[1]/sbml:listOfSpecies[1]/sbml:species[158]/@fbc:charge` are not defined. Only the following namespaces are defined for the target: `sbml`. - Change 993 is invalid. - One or more namespaces required for target `/sbml:sbml[1]/sbml:model[1]/sbml:listOfSpecies[1]/sbml:species[157]/@fbc:charge` are not defined. Only the following namespaces are defined for the target: `sbml`. - Variable `__var_993` is invalid. - One or more namespaces required for target `/sbml:sbml[1]/sbml:model[1]/sbml:listOfSpecies[1]/sbml:species[157]/@fbc:charge` are not defined. Only the following namespaces are defined for the target: `sbml`. - Change 995 is invalid. - One or more namespaces required for target `/sbml:sbml[1]/sbml:model[1]/sbml:listOfSpecies[1]/sbml:species[156]/@fbc:charge` are not defined. Only the following namespaces are defined for the target: `sbml`. - Variable `__var_995` is invalid. - One or more namespaces required for target `/sbml:sbml[1]/sbml:model[1]/sbml:listOfSpecies[1]/sbml:species[156]/@fbc:charge` are not defined. Only the following namespaces are defined for the target: `sbml`. - Change 997 is invalid. - One or more namespaces required for target `/sbml:sbml[1]/sbml:model[1]/sbml:listOfSpecies[1]/sbml:species[155]/@fbc:charge` are not defined. Only the following namespaces are defined for the target: `sbml`. - Variable `__var_997` is invalid. - One or more namespaces required for target `/sbml:sbml[1]/sbml:model[1]/sbml:listOfSpecies[1]/sbml:species[155]/@fbc:charge` are not defined. Only the following namespaces are defined for the target: `sbml`. - Change 999 is invalid. - One or more namespaces required for target `/sbml:sbml[1]/sbml:model[1]/sbml:listOfSpecies[1]/sbml:species[154]/@fbc:charge` are not defined. Only the following namespaces are defined for the target: `sbml`. - Variable `__var_999` is invalid. - One or more namespaces required for target `/sbml:sbml[1]/sbml:model[1]/sbml:listOfSpecies[1]/sbml:species[154]/@fbc:charge` are not defined. Only the following namespaces are defined for the target: `sbml`. - Change 1001 is invalid. - One or more namespaces required for target `/sbml:sbml[1]/sbml:model[1]/sbml:listOfSpecies[1]/sbml:species[153]/@fbc:charge` are not defined. Only the following namespaces are defined for the target: `sbml`. - Variable `__var_1001` is invalid. - One or more namespaces required for target `/sbml:sbml[1]/sbml:model[1]/sbml:listOfSpecies[1]/sbml:species[153]/@fbc:charge` are not defined. Only the following namespaces are defined for the target: `sbml`. - Change 1003 is invalid. - One or more namespaces required for target `/sbml:sbml[1]/sbml:model[1]/sbml:listOfSpecies[1]/sbml:species[152]/@fbc:charge` are not defined. Only the following namespaces are defined for the target: `sbml`. - Variable `__var_1003` is invalid. - One or more namespaces required for target `/sbml:sbml[1]/sbml:model[1]/sbml:listOfSpecies[1]/sbml:species[152]/@fbc:charge` are not defined. Only the following namespaces are defined for the target: `sbml`. - Change 1005 is invalid. - One or more namespaces required for target `/sbml:sbml[1]/sbml:model[1]/sbml:listOfSpecies[1]/sbml:species[151]/@fbc:charge` are not defined. Only the following namespaces are defined for the target: `sbml`. - Variable `__var_1005` is invalid. - One or more namespaces required for target `/sbml:sbml[1]/sbml:model[1]/sbml:listOfSpecies[1]/sbml:species[151]/@fbc:charge` are not defined. Only the following namespaces are defined for the target: `sbml`. - Change 1007 is invalid. - One or more namespaces required for target `/sbml:sbml[1]/sbml:model[1]/sbml:listOfSpecies[1]/sbml:species[150]/@fbc:charge` are not defined. Only the following namespaces are defined for the target: `sbml`. - Variable `__var_1007` is invalid. - One or more namespaces required for target `/sbml:sbml[1]/sbml:model[1]/sbml:listOfSpecies[1]/sbml:species[150]/@fbc:charge` are not defined. Only the following namespaces are defined for the target: `sbml`. - Change 1009 is invalid. - One or more namespaces required for target `/sbml:sbml[1]/sbml:model[1]/sbml:listOfSpecies[1]/sbml:species[149]/@fbc:charge` are not defined. Only the following namespaces are defined for the target: `sbml`. - Variable `__var_1009` is invalid. - One or more namespaces required for target `/sbml:sbml[1]/sbml:model[1]/sbml:listOfSpecies[1]/sbml:species[149]/@fbc:charge` are not defined. Only the following namespaces are defined for the target: `sbml`. - Change 1011 is invalid. - One or more namespaces required for target `/sbml:sbml[1]/sbml:model[1]/sbml:listOfSpecies[1]/sbml:species[148]/@fbc:charge` are not defined. Only the following namespaces are defined for the target: `sbml`. - Variable `__var_1011` is invalid. - One or more namespaces required for target `/sbml:sbml[1]/sbml:model[1]/sbml:listOfSpecies[1]/sbml:species[148]/@fbc:charge` are not defined. Only the following namespaces are defined for the target: `sbml`. - Change 1013 is invalid. - One or more namespaces required for target `/sbml:sbml[1]/sbml:model[1]/sbml:listOfSpecies[1]/sbml:species[147]/@fbc:charge` are not defined. Only the following namespaces are defined for the target: `sbml`. - Variable `__var_1013` is invalid. - One or more namespaces required for target `/sbml:sbml[1]/sbml:model[1]/sbml:listOfSpecies[1]/sbml:species[147]/@fbc:charge` are not defined. Only the following namespaces are defined for the target: `sbml`. - Change 1015 is invalid. - One or more namespaces required for target `/sbml:sbml[1]/sbml:model[1]/sbml:listOfSpecies[1]/sbml:species[146]/@fbc:charge` are not defined. Only the following namespaces are defined for the target: `sbml`. - Variable `__var_1015` is invalid. - One or more namespaces required for target `/sbml:sbml[1]/sbml:model[1]/sbml:listOfSpecies[1]/sbml:species[146]/@fbc:charge` are not defined. Only the following namespaces are defined for the target: `sbml`. - Change 1017 is invalid. - One or more namespaces required for target `/sbml:sbml[1]/sbml:model[1]/sbml:listOfSpecies[1]/sbml:species[145]/@fbc:charge` are not defined. Only the following namespaces are defined for the target: `sbml`. - Variable `__var_1017` is invalid. - One or more namespaces required for target `/sbml:sbml[1]/sbml:model[1]/sbml:listOfSpecies[1]/sbml:species[145]/@fbc:charge` are not defined. Only the following namespaces are defined for the target: `sbml`. - Change 1019 is invalid. - One or more namespaces required for target `/sbml:sbml[1]/sbml:model[1]/sbml:listOfSpecies[1]/sbml:species[144]/@fbc:charge` are not defined. Only the following namespaces are defined for the target: `sbml`. - Variable `__var_1019` is invalid. - One or more namespaces required for target `/sbml:sbml[1]/sbml:model[1]/sbml:listOfSpecies[1]/sbml:species[144]/@fbc:charge` are not defined. Only the following namespaces are defined for the target: `sbml`. - Change 1021 is invalid. - One or more namespaces required for target `/sbml:sbml[1]/sbml:model[1]/sbml:listOfSpecies[1]/sbml:species[143]/@fbc:charge` are not defined. Only the following namespaces are defined for the target: `sbml`. - Variable `__var_1021` is invalid. - One or more namespaces required for target `/sbml:sbml[1]/sbml:model[1]/sbml:listOfSpecies[1]/sbml:species[143]/@fbc:charge` are not defined. Only the following namespaces are defined for the target: `sbml`. - Change 1023 is invalid. - One or more namespaces required for target `/sbml:sbml[1]/sbml:model[1]/sbml:listOfSpecies[1]/sbml:species[142]/@fbc:charge` are not defined. Only the following namespaces are defined for the target: `sbml`. - Variable `__var_1023` is invalid. - One or more namespaces required for target `/sbml:sbml[1]/sbml:model[1]/sbml:listOfSpecies[1]/sbml:species[142]/@fbc:charge` are not defined. Only the following namespaces are defined for the target: `sbml`. - Change 1025 is invalid. - One or more namespaces required for target `/sbml:sbml[1]/sbml:model[1]/sbml:listOfSpecies[1]/sbml:species[141]/@fbc:charge` are not defined. Only the following namespaces are defined for the target: `sbml`. - Variable `__var_1025` is invalid. - One or more namespaces required for target `/sbml:sbml[1]/sbml:model[1]/sbml:listOfSpecies[1]/sbml:species[141]/@fbc:charge` are not defined. Only the following namespaces are defined for the target: `sbml`. - Change 1027 is invalid. - One or more namespaces required for target `/sbml:sbml[1]/sbml:model[1]/sbml:listOfSpecies[1]/sbml:species[140]/@fbc:charge` are not defined. Only the following namespaces are defined for the target: `sbml`. - Variable `__var_1027` is invalid. - One or more namespaces required for target `/sbml:sbml[1]/sbml:model[1]/sbml:listOfSpecies[1]/sbml:species[140]/@fbc:charge` are not defined. Only the following namespaces are defined for the target: `sbml`. - Change 1029 is invalid. - One or more namespaces required for target `/sbml:sbml[1]/sbml:model[1]/sbml:listOfSpecies[1]/sbml:species[139]/@fbc:charge` are not defined. Only the following namespaces are defined for the target: `sbml`. - Variable `__var_1029` is invalid. - One or more namespaces required for target `/sbml:sbml[1]/sbml:model[1]/sbml:listOfSpecies[1]/sbml:species[139]/@fbc:charge` are not defined. Only the following namespaces are defined for the target: `sbml`. - Change 1031 is invalid. - One or more namespaces required for target `/sbml:sbml[1]/sbml:model[1]/sbml:listOfSpecies[1]/sbml:species[138]/@fbc:charge` are not defined. Only the following namespaces are defined for the target: `sbml`. - Variable `__var_1031` is invalid. - One or more namespaces required for target `/sbml:sbml[1]/sbml:model[1]/sbml:listOfSpecies[1]/sbml:species[138]/@fbc:charge` are not defined. Only the following namespaces are defined for the target: `sbml`. - Change 1033 is invalid. - One or more namespaces required for target `/sbml:sbml[1]/sbml:model[1]/sbml:listOfSpecies[1]/sbml:species[137]/@fbc:charge` are not defined. Only the following namespaces are defined for the target: `sbml`. - Variable `__var_1033` is invalid. - One or more namespaces required for target `/sbml:sbml[1]/sbml:model[1]/sbml:listOfSpecies[1]/sbml:species[137]/@fbc:charge` are not defined. Only the following namespaces are defined for the target: `sbml`. - Change 1035 is invalid. - One or more namespaces required for target `/sbml:sbml[1]/sbml:model[1]/sbml:listOfSpecies[1]/sbml:species[136]/@fbc:charge` are not defined. Only the following namespaces are defined for the target: `sbml`. - Variable `__var_1035` is invalid. - One or more namespaces required for target `/sbml:sbml[1]/sbml:model[1]/sbml:listOfSpecies[1]/sbml:species[136]/@fbc:charge` are not defined. Only the following namespaces are defined for the target: `sbml`. - Change 1037 is invalid. - One or more namespaces required for target `/sbml:sbml[1]/sbml:model[1]/sbml:listOfSpecies[1]/sbml:species[135]/@fbc:charge` are not defined. Only the following namespaces are defined for the target: `sbml`. - Variable `__var_1037` is invalid. - One or more namespaces required for target `/sbml:sbml[1]/sbml:model[1]/sbml:listOfSpecies[1]/sbml:species[135]/@fbc:charge` are not defined. Only the following namespaces are defined for the target: `sbml`. - Change 1039 is invalid. - One or more namespaces required for target `/sbml:sbml[1]/sbml:model[1]/sbml:listOfSpecies[1]/sbml:species[134]/@fbc:charge` are not defined. Only the following namespaces are defined for the target: `sbml`. - Variable `__var_1039` is invalid. - One or more namespaces required for target `/sbml:sbml[1]/sbml:model[1]/sbml:listOfSpecies[1]/sbml:species[134]/@fbc:charge` are not defined. Only the following namespaces are defined for the target: `sbml`. - Change 1041 is invalid. - One or more namespaces required for target `/sbml:sbml[1]/sbml:model[1]/sbml:listOfSpecies[1]/sbml:species[133]/@fbc:charge` are not defined. Only the following namespaces are defined for the target: `sbml`. - Variable `__var_1041` is invalid. - One or more namespaces required for target `/sbml:sbml[1]/sbml:model[1]/sbml:listOfSpecies[1]/sbml:species[133]/@fbc:charge` are not defined. Only the following namespaces are defined for the target: `sbml`. - Change 1043 is invalid. - One or more namespaces required for target `/sbml:sbml[1]/sbml:model[1]/sbml:listOfSpecies[1]/sbml:species[132]/@fbc:charge` are not defined. Only the following namespaces are defined for the target: `sbml`. - Variable `__var_1043` is invalid. - One or more namespaces required for target `/sbml:sbml[1]/sbml:model[1]/sbml:listOfSpecies[1]/sbml:species[132]/@fbc:charge` are not defined. Only the following namespaces are defined for the target: `sbml`. - Change 1045 is invalid. - One or more namespaces required for target `/sbml:sbml[1]/sbml:model[1]/sbml:listOfSpecies[1]/sbml:species[131]/@fbc:charge` are not defined. Only the following namespaces are defined for the target: `sbml`. - Variable `__var_1045` is invalid. - One or more namespaces required for target `/sbml:sbml[1]/sbml:model[1]/sbml:listOfSpecies[1]/sbml:species[131]/@fbc:charge` are not defined. Only the following namespaces are defined for the target: `sbml`. - Change 1047 is invalid. - One or more namespaces required for target `/sbml:sbml[1]/sbml:model[1]/sbml:listOfSpecies[1]/sbml:species[130]/@fbc:charge` are not defined. Only the following namespaces are defined for the target: `sbml`. - Variable `__var_1047` is invalid. - One or more namespaces required for target `/sbml:sbml[1]/sbml:model[1]/sbml:listOfSpecies[1]/sbml:species[130]/@fbc:charge` are not defined. Only the following namespaces are defined for the target: `sbml`. - Change 1049 is invalid. - One or more namespaces required for target `/sbml:sbml[1]/sbml:model[1]/sbml:listOfSpecies[1]/sbml:species[129]/@fbc:charge` are not defined. Only the following namespaces are defined for the target: `sbml`. - Variable `__var_1049` is invalid. - One or more namespaces required for target `/sbml:sbml[1]/sbml:model[1]/sbml:listOfSpecies[1]/sbml:species[129]/@fbc:charge` are not defined. Only the following namespaces are defined for the target: `sbml`. - Change 1051 is invalid. - One or more namespaces required for target `/sbml:sbml[1]/sbml:model[1]/sbml:listOfSpecies[1]/sbml:species[128]/@fbc:charge` are not defined. Only the following namespaces are defined for the target: `sbml`. - Variable `__var_1051` is invalid. - One or more namespaces required for target `/sbml:sbml[1]/sbml:model[1]/sbml:listOfSpecies[1]/sbml:species[128]/@fbc:charge` are not defined. Only the following namespaces are defined for the target: `sbml`. - Change 1053 is invalid. - One or more namespaces required for target `/sbml:sbml[1]/sbml:model[1]/sbml:listOfSpecies[1]/sbml:species[127]/@fbc:charge` are not defined. Only the following namespaces are defined for the target: `sbml`. - Variable `__var_1053` is invalid. - One or more namespaces required for target `/sbml:sbml[1]/sbml:model[1]/sbml:listOfSpecies[1]/sbml:species[127]/@fbc:charge` are not defined. Only the following namespaces are defined for the target: `sbml`. - Change 1055 is invalid. - One or more namespaces required for target `/sbml:sbml[1]/sbml:model[1]/sbml:listOfSpecies[1]/sbml:species[126]/@fbc:charge` are not defined. Only the following namespaces are defined for the target: `sbml`. - Variable `__var_1055` is invalid. - One or more namespaces required for target `/sbml:sbml[1]/sbml:model[1]/sbml:listOfSpecies[1]/sbml:species[126]/@fbc:charge` are not defined. Only the following namespaces are defined for the target: `sbml`. - Change 1057 is invalid. - One or more namespaces required for target `/sbml:sbml[1]/sbml:model[1]/sbml:listOfSpecies[1]/sbml:species[125]/@fbc:charge` are not defined. Only the following namespaces are defined for the target: `sbml`. - Variable `__var_1057` is invalid. - One or more namespaces required for target `/sbml:sbml[1]/sbml:model[1]/sbml:listOfSpecies[1]/sbml:species[125]/@fbc:charge` are not defined. Only the following namespaces are defined for the target: `sbml`. - Change 1059 is invalid. - One or more namespaces required for target `/sbml:sbml[1]/sbml:model[1]/sbml:listOfSpecies[1]/sbml:species[124]/@fbc:charge` are not defined. Only the following namespaces are defined for the target: `sbml`. - Variable `__var_1059` is invalid. - One or more namespaces required for target `/sbml:sbml[1]/sbml:model[1]/sbml:listOfSpecies[1]/sbml:species[124]/@fbc:charge` are not defined. Only the following namespaces are defined for the target: `sbml`. - Change 1061 is invalid. - One or more namespaces required for target `/sbml:sbml[1]/sbml:model[1]/sbml:listOfSpecies[1]/sbml:species[123]/@fbc:charge` are not defined. Only the following namespaces are defined for the target: `sbml`. - Variable `__var_1061` is invalid. - One or more namespaces required for target `/sbml:sbml[1]/sbml:model[1]/sbml:listOfSpecies[1]/sbml:species[123]/@fbc:charge` are not defined. Only the following namespaces are defined for the target: `sbml`. - Change 1063 is invalid. - One or more namespaces required for target `/sbml:sbml[1]/sbml:model[1]/sbml:listOfSpecies[1]/sbml:species[122]/@fbc:charge` are not defined. Only the following namespaces are defined for the target: `sbml`. - Variable `__var_1063` is invalid. - One or more namespaces required for target `/sbml:sbml[1]/sbml:model[1]/sbml:listOfSpecies[1]/sbml:species[122]/@fbc:charge` are not defined. Only the following namespaces are defined for the target: `sbml`. - Change 1065 is invalid. - One or more namespaces required for target `/sbml:sbml[1]/sbml:model[1]/sbml:listOfSpecies[1]/sbml:species[121]/@fbc:charge` are not defined. Only the following namespaces are defined for the target: `sbml`. - Variable `__var_1065` is invalid. - One or more namespaces required for target `/sbml:sbml[1]/sbml:model[1]/sbml:listOfSpecies[1]/sbml:species[121]/@fbc:charge` are not defined. Only the following namespaces are defined for the target: `sbml`. - Change 1067 is invalid. - One or more namespaces required for target `/sbml:sbml[1]/sbml:model[1]/sbml:listOfSpecies[1]/sbml:species[120]/@fbc:charge` are not defined. Only the following namespaces are defined for the target: `sbml`. - Variable `__var_1067` is invalid. - One or more namespaces required for target `/sbml:sbml[1]/sbml:model[1]/sbml:listOfSpecies[1]/sbml:species[120]/@fbc:charge` are not defined. Only the following namespaces are defined for the target: `sbml`. - Change 1069 is invalid. - One or more namespaces required for target `/sbml:sbml[1]/sbml:model[1]/sbml:listOfSpecies[1]/sbml:species[119]/@fbc:charge` are not defined. Only the following namespaces are defined for the target: `sbml`. - Variable `__var_1069` is invalid. - One or more namespaces required for target `/sbml:sbml[1]/sbml:model[1]/sbml:listOfSpecies[1]/sbml:species[119]/@fbc:charge` are not defined. Only the following namespaces are defined for the target: `sbml`. - Change 1071 is invalid. - One or more namespaces required for target `/sbml:sbml[1]/sbml:model[1]/sbml:listOfSpecies[1]/sbml:species[118]/@fbc:charge` are not defined. Only the following namespaces are defined for the target: `sbml`. - Variable `__var_1071` is invalid. - One or more namespaces required for target `/sbml:sbml[1]/sbml:model[1]/sbml:listOfSpecies[1]/sbml:species[118]/@fbc:charge` are not defined. Only the following namespaces are defined for the target: `sbml`. - Change 1073 is invalid. - One or more namespaces required for target `/sbml:sbml[1]/sbml:model[1]/sbml:listOfSpecies[1]/sbml:species[117]/@fbc:charge` are not defined. Only the following namespaces are defined for the target: `sbml`. - Variable `__var_1073` is invalid. - One or more namespaces required for target `/sbml:sbml[1]/sbml:model[1]/sbml:listOfSpecies[1]/sbml:species[117]/@fbc:charge` are not defined. Only the following namespaces are defined for the target: `sbml`. - Change 1075 is invalid. - One or more namespaces required for target `/sbml:sbml[1]/sbml:model[1]/sbml:listOfSpecies[1]/sbml:species[116]/@fbc:charge` are not defined. Only the following namespaces are defined for the target: `sbml`. - Variable `__var_1075` is invalid. - One or more namespaces required for target `/sbml:sbml[1]/sbml:model[1]/sbml:listOfSpecies[1]/sbml:species[116]/@fbc:charge` are not defined. Only the following namespaces are defined for the target: `sbml`. - Change 1077 is invalid. - One or more namespaces required for target `/sbml:sbml[1]/sbml:model[1]/sbml:listOfSpecies[1]/sbml:species[115]/@fbc:charge` are not defined. Only the following namespaces are defined for the target: `sbml`. - Variable `__var_1077` is invalid. - One or more namespaces required for target `/sbml:sbml[1]/sbml:model[1]/sbml:listOfSpecies[1]/sbml:species[115]/@fbc:charge` are not defined. Only the following namespaces are defined for the target: `sbml`. - Change 1079 is invalid. - One or more namespaces required for target `/sbml:sbml[1]/sbml:model[1]/sbml:listOfSpecies[1]/sbml:species[114]/@fbc:charge` are not defined. Only the following namespaces are defined for the target: `sbml`. - Variable `__var_1079` is invalid. - One or more namespaces required for target `/sbml:sbml[1]/sbml:model[1]/sbml:listOfSpecies[1]/sbml:species[114]/@fbc:charge` are not defined. Only the following namespaces are defined for the target: `sbml`. - Change 1081 is invalid. - One or more namespaces required for target `/sbml:sbml[1]/sbml:model[1]/sbml:listOfSpecies[1]/sbml:species[113]/@fbc:charge` are not defined. Only the following namespaces are defined for the target: `sbml`. - Variable `__var_1081` is invalid. - One or more namespaces required for target `/sbml:sbml[1]/sbml:model[1]/sbml:listOfSpecies[1]/sbml:species[113]/@fbc:charge` are not defined. Only the following namespaces are defined for the target: `sbml`. - Change 1083 is invalid. - One or more namespaces required for target `/sbml:sbml[1]/sbml:model[1]/sbml:listOfSpecies[1]/sbml:species[112]/@fbc:charge` are not defined. Only the following namespaces are defined for the target: `sbml`. - Variable `__var_1083` is invalid. - One or more namespaces required for target `/sbml:sbml[1]/sbml:model[1]/sbml:listOfSpecies[1]/sbml:species[112]/@fbc:charge` are not defined. Only the following namespaces are defined for the target: `sbml`. - Change 1085 is invalid. - One or more namespaces required for target `/sbml:sbml[1]/sbml:model[1]/sbml:listOfSpecies[1]/sbml:species[111]/@fbc:charge` are not defined. Only the following namespaces are defined for the target: `sbml`. - Variable `__var_1085` is invalid. - One or more namespaces required for target `/sbml:sbml[1]/sbml:model[1]/sbml:listOfSpecies[1]/sbml:species[111]/@fbc:charge` are not defined. Only the following namespaces are defined for the target: `sbml`. - Change 1087 is invalid. - One or more namespaces required for target `/sbml:sbml[1]/sbml:model[1]/sbml:listOfSpecies[1]/sbml:species[110]/@fbc:charge` are not defined. Only the following namespaces are defined for the target: `sbml`. - Variable `__var_1087` is invalid. - One or more namespaces required for target `/sbml:sbml[1]/sbml:model[1]/sbml:listOfSpecies[1]/sbml:species[110]/@fbc:charge` are not defined. Only the following namespaces are defined for the target: `sbml`. - Change 1089 is invalid. - One or more namespaces required for target `/sbml:sbml[1]/sbml:model[1]/sbml:listOfSpecies[1]/sbml:species[109]/@fbc:charge` are not defined. Only the following namespaces are defined for the target: `sbml`. - Variable `__var_1089` is invalid. - One or more namespaces required for target `/sbml:sbml[1]/sbml:model[1]/sbml:listOfSpecies[1]/sbml:species[109]/@fbc:charge` are not defined. Only the following namespaces are defined for the target: `sbml`. - Change 1091 is invalid. - One or more namespaces required for target `/sbml:sbml[1]/sbml:model[1]/sbml:listOfSpecies[1]/sbml:species[108]/@fbc:charge` are not defined. Only the following namespaces are defined for the target: `sbml`. - Variable `__var_1091` is invalid. - One or more namespaces required for target `/sbml:sbml[1]/sbml:model[1]/sbml:listOfSpecies[1]/sbml:species[108]/@fbc:charge` are not defined. Only the following namespaces are defined for the target: `sbml`. - Change 1093 is invalid. - One or more namespaces required for target `/sbml:sbml[1]/sbml:model[1]/sbml:listOfSpecies[1]/sbml:species[107]/@fbc:charge` are not defined. Only the following namespaces are defined for the target: `sbml`. - Variable `__var_1093` is invalid. - One or more namespaces required for target `/sbml:sbml[1]/sbml:model[1]/sbml:listOfSpecies[1]/sbml:species[107]/@fbc:charge` are not defined. Only the following namespaces are defined for the target: `sbml`. - Change 1095 is invalid. - One or more namespaces required for target `/sbml:sbml[1]/sbml:model[1]/sbml:listOfSpecies[1]/sbml:species[106]/@fbc:charge` are not defined. Only the following namespaces are defined for the target: `sbml`. - Variable `__var_1095` is invalid. - One or more namespaces required for target `/sbml:sbml[1]/sbml:model[1]/sbml:listOfSpecies[1]/sbml:species[106]/@fbc:charge` are not defined. Only the following namespaces are defined for the target: `sbml`. - Change 1097 is invalid. - One or more namespaces required for target `/sbml:sbml[1]/sbml:model[1]/sbml:listOfSpecies[1]/sbml:species[105]/@fbc:charge` are not defined. Only the following namespaces are defined for the target: `sbml`. - Variable `__var_1097` is invalid. - One or more namespaces required for target `/sbml:sbml[1]/sbml:model[1]/sbml:listOfSpecies[1]/sbml:species[105]/@fbc:charge` are not defined. Only the following namespaces are defined for the target: `sbml`. - Change 1099 is invalid. - One or more namespaces required for target `/sbml:sbml[1]/sbml:model[1]/sbml:listOfSpecies[1]/sbml:species[104]/@fbc:charge` are not defined. Only the following namespaces are defined for the target: `sbml`. - Variable `__var_1099` is invalid. - One or more namespaces required for target `/sbml:sbml[1]/sbml:model[1]/sbml:listOfSpecies[1]/sbml:species[104]/@fbc:charge` are not defined. Only the following namespaces are defined for the target: `sbml`. - Change 1101 is invalid. - One or more namespaces required for target `/sbml:sbml[1]/sbml:model[1]/sbml:listOfSpecies[1]/sbml:species[103]/@fbc:charge` are not defined. Only the following namespaces are defined for the target: `sbml`. - Variable `__var_1101` is invalid. - One or more namespaces required for target `/sbml:sbml[1]/sbml:model[1]/sbml:listOfSpecies[1]/sbml:species[103]/@fbc:charge` are not defined. Only the following namespaces are defined for the target: `sbml`. - Change 1103 is invalid. - One or more namespaces required for target `/sbml:sbml[1]/sbml:model[1]/sbml:listOfSpecies[1]/sbml:species[102]/@fbc:charge` are not defined. Only the following namespaces are defined for the target: `sbml`. - Variable `__var_1103` is invalid. - One or more namespaces required for target `/sbml:sbml[1]/sbml:model[1]/sbml:listOfSpecies[1]/sbml:species[102]/@fbc:charge` are not defined. Only the following namespaces are defined for the target: `sbml`. - Change 1105 is invalid. - One or more namespaces required for target `/sbml:sbml[1]/sbml:model[1]/sbml:listOfSpecies[1]/sbml:species[101]/@fbc:charge` are not defined. Only the following namespaces are defined for the target: `sbml`. - Variable `__var_1105` is invalid. - One or more namespaces required for target `/sbml:sbml[1]/sbml:model[1]/sbml:listOfSpecies[1]/sbml:species[101]/@fbc:charge` are not defined. Only the following namespaces are defined for the target: `sbml`. - Change 1107 is invalid. - One or more namespaces required for target `/sbml:sbml[1]/sbml:model[1]/sbml:listOfSpecies[1]/sbml:species[100]/@fbc:charge` are not defined. Only the following namespaces are defined for the target: `sbml`. - Variable `__var_1107` is invalid. - One or more namespaces required for target `/sbml:sbml[1]/sbml:model[1]/sbml:listOfSpecies[1]/sbml:species[100]/@fbc:charge` are not defined. Only the following namespaces are defined for the target: `sbml`. - Change 1109 is invalid. - One or more namespaces required for target `/sbml:sbml[1]/sbml:model[1]/sbml:listOfSpecies[1]/sbml:species[99]/@fbc:charge` are not defined. Only the following namespaces are defined for the target: `sbml`. - Variable `__var_1109` is invalid. - One or more namespaces required for target `/sbml:sbml[1]/sbml:model[1]/sbml:listOfSpecies[1]/sbml:species[99]/@fbc:charge` are not defined. Only the following namespaces are defined for the target: `sbml`. - Change 1111 is invalid. - One or more namespaces required for target `/sbml:sbml[1]/sbml:model[1]/sbml:listOfSpecies[1]/sbml:species[98]/@fbc:charge` are not defined. Only the following namespaces are defined for the target: `sbml`. - Variable `__var_1111` is invalid. - One or more namespaces required for target `/sbml:sbml[1]/sbml:model[1]/sbml:listOfSpecies[1]/sbml:species[98]/@fbc:charge` are not defined. Only the following namespaces are defined for the target: `sbml`. - Change 1113 is invalid. - One or more namespaces required for target `/sbml:sbml[1]/sbml:model[1]/sbml:listOfSpecies[1]/sbml:species[97]/@fbc:charge` are not defined. Only the following namespaces are defined for the target: `sbml`. - Variable `__var_1113` is invalid. - One or more namespaces required for target `/sbml:sbml[1]/sbml:model[1]/sbml:listOfSpecies[1]/sbml:species[97]/@fbc:charge` are not defined. Only the following namespaces are defined for the target: `sbml`. - Change 1115 is invalid. - One or more namespaces required for target `/sbml:sbml[1]/sbml:model[1]/sbml:listOfSpecies[1]/sbml:species[96]/@fbc:charge` are not defined. Only the following namespaces are defined for the target: `sbml`. - Variable `__var_1115` is invalid. - One or more namespaces required for target `/sbml:sbml[1]/sbml:model[1]/sbml:listOfSpecies[1]/sbml:species[96]/@fbc:charge` are not defined. Only the following namespaces are defined for the target: `sbml`. - Change 1117 is invalid. - One or more namespaces required for target `/sbml:sbml[1]/sbml:model[1]/sbml:listOfSpecies[1]/sbml:species[95]/@fbc:charge` are not defined. Only the following namespaces are defined for the target: `sbml`. - Variable `__var_1117` is invalid. - One or more namespaces required for target `/sbml:sbml[1]/sbml:model[1]/sbml:listOfSpecies[1]/sbml:species[95]/@fbc:charge` are not defined. Only the following namespaces are defined for the target: `sbml`. - Change 1119 is invalid. - One or more namespaces required for target `/sbml:sbml[1]/sbml:model[1]/sbml:listOfSpecies[1]/sbml:species[94]/@fbc:charge` are not defined. Only the following namespaces are defined for the target: `sbml`. - Variable `__var_1119` is invalid. - One or more namespaces required for target `/sbml:sbml[1]/sbml:model[1]/sbml:listOfSpecies[1]/sbml:species[94]/@fbc:charge` are not defined. Only the following namespaces are defined for the target: `sbml`. - Change 1121 is invalid. - One or more namespaces required for target `/sbml:sbml[1]/sbml:model[1]/sbml:listOfSpecies[1]/sbml:species[93]/@fbc:charge` are not defined. Only the following namespaces are defined for the target: `sbml`. - Variable `__var_1121` is invalid. - One or more namespaces required for target `/sbml:sbml[1]/sbml:model[1]/sbml:listOfSpecies[1]/sbml:species[93]/@fbc:charge` are not defined. Only the following namespaces are defined for the target: `sbml`. - Change 1123 is invalid. - One or more namespaces required for target `/sbml:sbml[1]/sbml:model[1]/sbml:listOfSpecies[1]/sbml:species[92]/@fbc:charge` are not defined. Only the following namespaces are defined for the target: `sbml`. - Variable `__var_1123` is invalid. - One or more namespaces required for target `/sbml:sbml[1]/sbml:model[1]/sbml:listOfSpecies[1]/sbml:species[92]/@fbc:charge` are not defined. Only the following namespaces are defined for the target: `sbml`. - Change 1125 is invalid. - One or more namespaces required for target `/sbml:sbml[1]/sbml:model[1]/sbml:listOfSpecies[1]/sbml:species[91]/@fbc:charge` are not defined. Only the following namespaces are defined for the target: `sbml`. - Variable `__var_1125` is invalid. - One or more namespaces required for target `/sbml:sbml[1]/sbml:model[1]/sbml:listOfSpecies[1]/sbml:species[91]/@fbc:charge` are not defined. Only the following namespaces are defined for the target: `sbml`. - Change 1127 is invalid. - One or more namespaces required for target `/sbml:sbml[1]/sbml:model[1]/sbml:listOfSpecies[1]/sbml:species[90]/@fbc:charge` are not defined. Only the following namespaces are defined for the target: `sbml`. - Variable `__var_1127` is invalid. - One or more namespaces required for target `/sbml:sbml[1]/sbml:model[1]/sbml:listOfSpecies[1]/sbml:species[90]/@fbc:charge` are not defined. Only the following namespaces are defined for the target: `sbml`. - Change 1129 is invalid. - One or more namespaces required for target `/sbml:sbml[1]/sbml:model[1]/sbml:listOfSpecies[1]/sbml:species[89]/@fbc:charge` are not defined. Only the following namespaces are defined for the target: `sbml`. - Variable `__var_1129` is invalid. - One or more namespaces required for target `/sbml:sbml[1]/sbml:model[1]/sbml:listOfSpecies[1]/sbml:species[89]/@fbc:charge` are not defined. Only the following namespaces are defined for the target: `sbml`. - Change 1131 is invalid. - One or more namespaces required for target `/sbml:sbml[1]/sbml:model[1]/sbml:listOfSpecies[1]/sbml:species[88]/@fbc:charge` are not defined. Only the following namespaces are defined for the target: `sbml`. - Variable `__var_1131` is invalid. - One or more namespaces required for target `/sbml:sbml[1]/sbml:model[1]/sbml:listOfSpecies[1]/sbml:species[88]/@fbc:charge` are not defined. Only the following namespaces are defined for the target: `sbml`. - Change 1133 is invalid. - One or more namespaces required for target `/sbml:sbml[1]/sbml:model[1]/sbml:listOfSpecies[1]/sbml:species[87]/@fbc:charge` are not defined. Only the following namespaces are defined for the target: `sbml`. - Variable `__var_1133` is invalid. - One or more namespaces required for target `/sbml:sbml[1]/sbml:model[1]/sbml:listOfSpecies[1]/sbml:species[87]/@fbc:charge` are not defined. Only the following namespaces are defined for the target: `sbml`. - Change 1135 is invalid. - One or more namespaces required for target `/sbml:sbml[1]/sbml:model[1]/sbml:listOfSpecies[1]/sbml:species[86]/@fbc:charge` are not defined. Only the following namespaces are defined for the target: `sbml`. - Variable `__var_1135` is invalid. - One or more namespaces required for target `/sbml:sbml[1]/sbml:model[1]/sbml:listOfSpecies[1]/sbml:species[86]/@fbc:charge` are not defined. Only the following namespaces are defined for the target: `sbml`. - Change 1137 is invalid. - One or more namespaces required for target `/sbml:sbml[1]/sbml:model[1]/sbml:listOfSpecies[1]/sbml:species[85]/@fbc:charge` are not defined. Only the following namespaces are defined for the target: `sbml`. - Variable `__var_1137` is invalid. - One or more namespaces required for target `/sbml:sbml[1]/sbml:model[1]/sbml:listOfSpecies[1]/sbml:species[85]/@fbc:charge` are not defined. Only the following namespaces are defined for the target: `sbml`. - Change 1139 is invalid. - One or more namespaces required for target `/sbml:sbml[1]/sbml:model[1]/sbml:listOfSpecies[1]/sbml:species[84]/@fbc:charge` are not defined. Only the following namespaces are defined for the target: `sbml`. - Variable `__var_1139` is invalid. - One or more namespaces required for target `/sbml:sbml[1]/sbml:model[1]/sbml:listOfSpecies[1]/sbml:species[84]/@fbc:charge` are not defined. Only the following namespaces are defined for the target: `sbml`. - Change 1141 is invalid. - One or more namespaces required for target `/sbml:sbml[1]/sbml:model[1]/sbml:listOfSpecies[1]/sbml:species[83]/@fbc:charge` are not defined. Only the following namespaces are defined for the target: `sbml`. - Variable `__var_1141` is invalid. - One or more namespaces required for target `/sbml:sbml[1]/sbml:model[1]/sbml:listOfSpecies[1]/sbml:species[83]/@fbc:charge` are not defined. Only the following namespaces are defined for the target: `sbml`. - Change 1143 is invalid. - One or more namespaces required for target `/sbml:sbml[1]/sbml:model[1]/sbml:listOfSpecies[1]/sbml:species[82]/@fbc:charge` are not defined. Only the following namespaces are defined for the target: `sbml`. - Variable `__var_1143` is invalid. - One or more namespaces required for target `/sbml:sbml[1]/sbml:model[1]/sbml:listOfSpecies[1]/sbml:species[82]/@fbc:charge` are not defined. Only the following namespaces are defined for the target: `sbml`. - Change 1145 is invalid. - One or more namespaces required for target `/sbml:sbml[1]/sbml:model[1]/sbml:listOfSpecies[1]/sbml:species[81]/@fbc:charge` are not defined. Only the following namespaces are defined for the target: `sbml`. - Variable `__var_1145` is invalid. - One or more namespaces required for target `/sbml:sbml[1]/sbml:model[1]/sbml:listOfSpecies[1]/sbml:species[81]/@fbc:charge` are not defined. Only the following namespaces are defined for the target: `sbml`. - Change 1147 is invalid. - One or more namespaces required for target `/sbml:sbml[1]/sbml:model[1]/sbml:listOfSpecies[1]/sbml:species[80]/@fbc:charge` are not defined. Only the following namespaces are defined for the target: `sbml`. - Variable `__var_1147` is invalid. - One or more namespaces required for target `/sbml:sbml[1]/sbml:model[1]/sbml:listOfSpecies[1]/sbml:species[80]/@fbc:charge` are not defined. Only the following namespaces are defined for the target: `sbml`. - Change 1149 is invalid. - One or more namespaces required for target `/sbml:sbml[1]/sbml:model[1]/sbml:listOfSpecies[1]/sbml:species[79]/@fbc:charge` are not defined. Only the following namespaces are defined for the target: `sbml`. - Variable `__var_1149` is invalid. - One or more namespaces required for target `/sbml:sbml[1]/sbml:model[1]/sbml:listOfSpecies[1]/sbml:species[79]/@fbc:charge` are not defined. Only the following namespaces are defined for the target: `sbml`. - Change 1151 is invalid. - One or more namespaces required for target `/sbml:sbml[1]/sbml:model[1]/sbml:listOfSpecies[1]/sbml:species[78]/@fbc:charge` are not defined. Only the following namespaces are defined for the target: `sbml`. - Variable `__var_11 ...
biosimulators-daemon commented 2 years ago

The image for your simulator is valid!

biosimulators-daemon commented 2 years ago

The validation/submission of your simulator failed.

- A Singularity image could not be generated for the Docker image
- 
-   - Internal Server Error (500):
-     
-       An unexpected error occurred

The complete log of your validation/submission job, including further information about the failure, is available for 90 days here.

If you chose to validate your Docker image, the results of the validation of your image will be available shortly as a JSON file. A link to this file will be available for 90 days from the "Artifacts" section at the bottom of this page.

Once you have fixed the problem, edit the first block of this issue to re-initiate this validation.

The BioSimulators Team is happy to help. Questions and feedback can be directed to the BioSimulators Team by posting comments to this issues that reference the GitHub team @biosimulators/biosimulators (without the backticks).

jonrkarr commented 2 years ago

I manually refreshed the image because of SSH connection issues with the API