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biosimulators / Biosimulators_AMICI

AMICI biochemical network simulation program via BioSimulators-compliant command-line interface and Docker container
https://docs.biosimulators.org/Biosimulators_AMICI
MIT License
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Fix observable IDs #8

Closed dweindl closed 1 year ago

dweindl commented 1 year ago

IDs in AMICI models have to be globally unique.

Fixes errors of type E amici.import_utils.SBMLException: AMICI tried to add a local symbol AL with value AL, but AL was already instantiated with AL. This means that there are multiple SBML elements with SId AL, which is invalid SBML. This can be fixed by renaming the elements with SId AL.

re https://github.com/biosimulators/Biosimulators_AMICI/issues/7#issuecomment-1605124828