COPASI or wrapper should support KISAO terms for algorithms and algorithm parameters

biosimulators / Biosimulators_COPASI

COPASI biochemical network simulation program via BioSimulators-compliant command-line interface and Docker container

MIT License

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Closed jonrkarr closed 3 years ago

jonrkarr commented 4 years ago

Currently, COPASI appears to only support KISAO terms for three algorithms. COPASI also appears to have no KISAO support for algorithm parameters.

Timecourse
- Continuous
- KISAO:0000019: CVODE
- Discrete
- KISAO:0000241: Gillespie-like method
Steady-state
- KISAO:0000282: KINSOL

COPASI and/or the wrapper needs to support more of the algorithms supported by COPASI and their parameters.

jonrkarr commented 3 years ago

This packages supports distinct KiSAO terms for each algorithm, although COPASI itself does not.