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biosimulators / Biosimulators_COPASI

COPASI biochemical network simulation program via BioSimulators-compliant command-line interface and Docker container
https://docs.biosimulators.org/Biosimulators_COPASI
MIT License
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Support hybrid RK45 method #43

Closed jonrkarr closed 3 years ago

jonrkarr commented 3 years ago

As discussed in #25, this package cannot support the hybrid RK45 method because python-COPASI doesn't support setting the partitioning parameter. @fbergmann please let us know when python-COPASI is updated so we extend support to this package, the COPASI docker image, and all downstream tools such as runBioSimulations.

fbergmann commented 3 years ago

@jonrkarr, i've released a new python-copasi package (version 4.30.233), that you can use with the code from issue #25 to set the deterministic reactions.

jonrkarr commented 3 years ago

Thanks! I code similar to #25 to implement this. All time course simulation methods and all of their parameters appear to now be working and attached to KiSAO terms.