Create KISAO term for hybrid tau solver

[jonrkarr]

This question is for the GillesPy2 developers

[jonrkarr]

From Brian Drawert: this is a new algorithm, not slow-scale SSA.

We'll need to add a new KiSAO term for this. @briandrawert can you provide information for a new KiSAO term

• Name
• Synonyms, if any
• Brief description
• Reference, if any -- can be article, preprint, website, etc.
• Any relationships to other KiSAO terms
  • child of KISAO_0000352 (hybrid method)
  • child of KISAO_0000333 (accelerated stochastic simulation algorithm)

[briandrawert]

• Name: Hybrid Tau-Leaping Method • Synonyms: None • Brief description: A continuously coupled hybrid deterministic/stochastic simulation algorithm for biochemical networks. Biochemical species are classified as continuous, discrete, or switch. Tau-leaping is used to simulate stochastic species, and LSODA is used to simulate continuous species. Switch species are dynamically classified as either continuous or discrete at each timestep depending on a user defined error tolerance. • Reference: https://github.com/StochSS/GillesPy2 • Any relationships to other KiSAO terms: • child of KISAO_0000352 (hybrid method) • child of KISAO_0000333 (accelerated stochastic simulation algorithm)

[jonrkarr]

Thanks! I'll get this added to KiSAO.

[jonrkarr]

Will be added as KISAO_0000575

[jonrkarr]

Todo

• [ ] incorporate new term into release
• [ ] update GillesPy2 specifications

[jonrkarr]

Done