biosimulators / Biosimulators_tellurium

tellurium biochemical network simulation program via BioSimulators-compliant command-line interface and Docker container
https://docs.biosimulators.org/Biosimulators_tellurium
MIT License
1 stars 2 forks source link

Tie into 'implement-set-get-reset' branch of biosimulators_utils #13

Closed luciansmith closed 1 year ago

luciansmith commented 1 year ago

Implement simple get/set/reset functions for Tellurium. Since the roadrunner object lived in the 'preprocessed_task' object, use that. (This probably makes sense anyway: I think the 'preprocessed_task' object can basically function as a 'model state' object, which is exactly the thing that needs to be manipulated.)

codecov[bot] commented 1 year ago

Codecov Report

Patch coverage: 86.61% and project coverage change: -2.50% :warning:

Comparison is base (a744377) 95.22% compared to head (26f9975) 92.72%.

:exclamation: Current head 26f9975 differs from pull request most recent head 31fb8e7. Consider uploading reports for the commit 31fb8e7 to get more accurate results

Additional details and impacted files ```diff @@ Coverage Diff @@ ## dev #13 +/- ## ========================================== - Coverage 95.22% 92.72% -2.50% ========================================== Files 6 6 Lines 377 440 +63 ========================================== + Hits 359 408 +49 - Misses 18 32 +14 ``` | Flag | Coverage Δ | | |---|---|---| | unittests | `92.72% <86.61%> (-2.50%)` | :arrow_down: | Flags with carried forward coverage won't be shown. [Click here](https://docs.codecov.io/docs/carryforward-flags?utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=biosimulators#carryforward-flags-in-the-pull-request-comment) to find out more. | [Files Changed](https://app.codecov.io/gh/biosimulators/Biosimulators_tellurium/pull/13?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=biosimulators) | Coverage Δ | | |---|---|---| | [biosimulators\_tellurium/core.py](https://app.codecov.io/gh/biosimulators/Biosimulators_tellurium/pull/13?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=biosimulators#diff-Ymlvc2ltdWxhdG9yc190ZWxsdXJpdW0vY29yZS5weQ==) | `91.66% <86.13%> (-2.70%)` | :arrow_down: | | [biosimulators\_tellurium/data\_model.py](https://app.codecov.io/gh/biosimulators/Biosimulators_tellurium/pull/13?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=biosimulators#diff-Ymlvc2ltdWxhdG9yc190ZWxsdXJpdW0vZGF0YV9tb2RlbC5weQ==) | `100.00% <100.00%> (ø)` | |

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