biosimulators / Biosimulators_tellurium

tellurium biochemical network simulation program via BioSimulators-compliant command-line interface and Docker container
https://docs.biosimulators.org/Biosimulators_tellurium
MIT License
1 stars 2 forks source link

Fix situation when the output start time is different from the initia… #16

Closed luciansmith closed 1 year ago

luciansmith commented 1 year ago

…l time.

Do this with presimulation: simulate up to output start time, then simulate again. This fixes runs of biomodels that use the technique, but don't have an evenly-divisible presimulation time.

codecov[bot] commented 1 year ago

Codecov Report

Patch coverage: 100.00% and project coverage change: -0.02% :warning:

Comparison is base (976f6f4) 92.43% compared to head (e6bdc41) 92.41%. Report is 1 commits behind head on dev.

Additional details and impacted files ```diff @@ Coverage Diff @@ ## dev #16 +/- ## ========================================== - Coverage 92.43% 92.41% -0.02% ========================================== Files 6 6 Lines 436 435 -1 ========================================== - Hits 403 402 -1 Misses 33 33 ``` | Flag | Coverage Δ | | |---|---|---| | unittests | `92.41% <100.00%> (-0.02%)` | :arrow_down: | Flags with carried forward coverage won't be shown. [Click here](https://docs.codecov.io/docs/carryforward-flags?utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=biosimulators#carryforward-flags-in-the-pull-request-comment) to find out more. | [Files Changed](https://app.codecov.io/gh/biosimulators/Biosimulators_tellurium/pull/16?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=biosimulators) | Coverage Δ | | |---|---|---| | [biosimulators\_tellurium/core.py](https://app.codecov.io/gh/biosimulators/Biosimulators_tellurium/pull/16?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=biosimulators#diff-Ymlvc2ltdWxhdG9yc190ZWxsdXJpdW0vY29yZS5weQ==) | `91.29% <100.00%> (-0.03%)` | :arrow_down: |

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