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biosimulators / Biosimulators_tellurium

tellurium biochemical network simulation program via BioSimulators-compliant command-line interface and Docker container
https://docs.biosimulators.org/Biosimulators_tellurium
MIT License
1 stars 2 forks source link

Try presimulation with steady state algorithms. #20

Closed luciansmith closed 1 year ago

luciansmith commented 1 year ago

Also, better error message for failing because of NaN's.

codecov[bot] commented 1 year ago

Codecov Report

Patch coverage: 64.44% and project coverage change: -2.81% :warning:

Comparison is base (e8cf9ec) 92.18% compared to head (968aed0) 89.38%. Report is 1 commits behind head on dev.

Additional details and impacted files ```diff @@ Coverage Diff @@ ## dev #20 +/- ## ========================================== - Coverage 92.18% 89.38% -2.81% ========================================== Files 6 6 Lines 448 471 +23 ========================================== + Hits 413 421 +8 - Misses 35 50 +15 ``` | [Flag](https://app.codecov.io/gh/biosimulators/Biosimulators_tellurium/pull/20/flags?src=pr&el=flags&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=biosimulators) | Coverage Δ | | |---|---|---| | [unittests](https://app.codecov.io/gh/biosimulators/Biosimulators_tellurium/pull/20/flags?src=pr&el=flag&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=biosimulators) | `89.38% <64.44%> (-2.81%)` | :arrow_down: | Flags with carried forward coverage won't be shown. [Click here](https://docs.codecov.io/docs/carryforward-flags?utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=biosimulators#carryforward-flags-in-the-pull-request-comment) to find out more. | [Files Changed](https://app.codecov.io/gh/biosimulators/Biosimulators_tellurium/pull/20?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=biosimulators) | Coverage Δ | | |---|---|---| | [biosimulators\_tellurium/core.py](https://app.codecov.io/gh/biosimulators/Biosimulators_tellurium/pull/20?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=biosimulators#diff-Ymlvc2ltdWxhdG9yc190ZWxsdXJpdW0vY29yZS5weQ==) | `87.95% <63.63%> (-3.12%)` | :arrow_down: | | [biosimulators\_tellurium/\_version.py](https://app.codecov.io/gh/biosimulators/Biosimulators_tellurium/pull/20?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=biosimulators#diff-Ymlvc2ltdWxhdG9yc190ZWxsdXJpdW0vX3ZlcnNpb24ucHk=) | `100.00% <100.00%> (ø)` | |

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