biosimulators Biosimulators_test_suite issues

biosimulators / Biosimulators_test_suite

Tool for validating that biosimulation software tools implement the BioSimulators standards for simulators

https://docs.biosimulators.org/Biosimulators_test_suite/

MIT License

7 stars 2 forks source link

issues

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Bump numexpr from 2.8.4 to 2.8.5

#80 dependabot[bot] opened 1 month ago
0
Add smoldyn model

#79 CodeByDrescher opened 1 month ago
0
Pip installs are missing necessary "examples" directory at higher parent level

#78 CodeByDrescher opened 1 month ago
0
Bump tornado from 6.3.1 to 6.4.1

#77 dependabot[bot] opened 1 month ago
1
Bump pyyaml from 5.3.1 to 5.4

#76 dependabot[bot] opened 1 month ago
1
Bump certifi from 2022.12.7 to 2024.7.4

#75 dependabot[bot] opened 1 month ago
1
Bump zipp from 3.15.0 to 3.19.1

#74 dependabot[bot] opened 1 month ago
1
Bump urllib3 from 1.26.15 to 1.26.19

#73 dependabot[bot] opened 1 month ago
1
Poetry build

#72 CodeByDrescher closed 1 month ago
1
For 0.1.88

#71 luciansmith closed 1 year ago
1
Fix synthetic changes

#70 luciansmith closed 1 year ago
2
Merge latest from dev

#68 luciansmith closed 1 year ago
1
Can't update release number for wheel

#67 luciansmith opened 1 year ago
0
pass tests

#66 eagmon closed 1 year ago
2
Fixed erroneous "KISAO_000019" references by adding another '0'

#65 CodeByDrescher closed 2 years ago
1
build large singularity images fails with default settings

#64 moraru opened 2 years ago
0
Biosimulators_test_suite suffers from effect of biosimulators/Biosimulators_utils#115

#63 CodeByDrescher opened 2 years ago
0
invalid test suite published model template

#62 moraru opened 2 years ago
0
Attributes not implemented on windows

#61 danv61 opened 2 years ago
0
[Bug]: Log validation did not catch recent errors with vcell image

#59 bilalshaikh42 closed 2 years ago
3
Update dev deployment of biosimulators along with prod when processing simulator submissions

#60 bilalshaikh42 closed 2 years ago
2
Enable test suite to be run with Singularity rather than Docker images

#58 jonrkarr opened 3 years ago
0
Add test case for simulation re-start-ability

#57 jonrkarr opened 3 years ago
0
Add more direct tests for model changes

#56 jonrkarr opened 3 years ago
0
Wrong warning when running the test suite.

#55 danv61 closed 3 years ago
1
Wrong warning when running the test suite.

#54 danv61 closed 3 years ago
1
Metadata for example COMBINE/OMEX archives

#52 jonrkarr closed 3 years ago
0
Added metadata information.

#51 jonrkarr closed 3 years ago
0
Added metadata information.

#50 jonrkarr closed 3 years ago
0
Added meta data

#49 jonrkarr closed 3 years ago
0
Added metadata for Szymanska

#48 jonrkarr closed 3 years ago
0
Update metadata.rdf

#47 jonrkarr closed 3 years ago
0
Added metadata information

#46 jonrkarr closed 3 years ago
0
Add option to execute test cases involving similar algorithms

#45 jonrkarr opened 3 years ago
0
Move results and vega figures into folders?

#44 bilalshaikh42 closed 3 years ago
2
Unpack example COMBINE/OMEX arhives

#43 jonrkarr closed 3 years ago
1
Add test case to check that data generators for plots are encoded into HDF5 consistently with the BioSimulators guidelines

#42 jonrkarr closed 3 years ago
1
Add metadata about examples following OMEX Metadata guidelines

#41 jonrkarr closed 3 years ago
3
Add test for resolution of model sources at absolute paths

#40 jonrkarr opened 3 years ago
0
Add test case for random number generator functions (e.g., uniform, normal, poisson)

#39 jonrkarr opened 3 years ago
0
Add test case for aggregate mathematical functions (e.g., min, max, sum)

#38 jonrkarr opened 3 years ago
0
Setup system for managing access to revising specifications of simulators

#37 jonrkarr closed 3 years ago
1
Remove Ciliberto discrete example

#35 jonrkarr closed 3 years ago
1
Debug posting of results to GitHub issues

#36 jonrkarr closed 3 years ago
1
Create additional example Vega visualizations

#34 jonrkarr closed 3 years ago
1
Update Caravagna-J-Theor-Biol-2010-tumor-suppressive-oscillations.json

#33 bilalshaikh42 closed 3 years ago
0
Split Vilar example into separate files for deterministic and discrete simulation

#32 jonrkarr closed 3 years ago
1
Check that example logs in documentation are valid

#31 jonrkarr closed 3 years ago
1
Use JSON schema for logs to check that logs are formatted correctly

#30 jonrkarr opened 3 years ago
1
Fix the broken SED-ML element

#29 gmarupilla closed 3 years ago
5