Allow model.source to be an id of another model

biosimulators / Biosimulators_utils

Utilities for building standardized command-line interfaces for biosimulation software packages

https://docs.biosimulators.org/Biosimulators_utils

MIT License

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Allow model.source to be an id of another model #11

Closed jonrkarr closed 3 years ago

jonrkarr commented 3 years ago

SED-ML allows the following additional ways of defining the sources of models

[x] id of another model
[x] MIRIAM URN for BioModels (e.g., urn:miriam:biomodels.db:BIOMD0000000012 --> https://identifiers.org/biomodels.db:BIOMD0000000012 --> https://www.ebi.ac.uk/biomodels-main/BIOMD0000000012)
[x] URL

For compatibility with the spirit of COMBINE archives, I think SED-ML files in COMBINE archives should be self-contained, and not reference external entities via URLs and identifiers.

jonrkarr commented 3 years ago

Done