The ReportReader at biosimulators_utils/report/io.py:271 uses this deprecated feature (Note: this may not be the only occurrence of this issue in the project):
data_set_results[i_data_set][data_set_slice]
where data_set_results is a ndarray of ndarrays of float64 data
i_data_set is an int
data_set_slice is a list of slice objects
Long term all instances of this issue should be patched out properly, but short term changing the requirement to numpy<=1.22.4 would, for example, help fix biosimulators_test_suite.
According to https://github.com/numpy/numpy/pull/21029, Numpy no longer accepts non-tuple based indexing of nd-arrays.
The ReportReader at biosimulators_utils/report/io.py:271 uses this deprecated feature (Note: this may not be the only occurrence of this issue in the project):
data_set_results[i_data_set][data_set_slice]where
data_set_resultsis a ndarray of ndarrays of float64 datai_data_setis an intdata_set_sliceis alistofsliceobjectsLong term all instances of this issue should be patched out properly, but short term changing the requirement to
numpy<=1.22.4would, for example, help fix biosimulators_test_suite.