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biosimulators / Biosimulators_utils

Utilities for building standardized command-line interfaces for biosimulation software packages
https://docs.biosimulators.org/Biosimulators_utils
MIT License
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Incorrect validation error for tasks that reference models. #124

Open luciansmith opened 1 year ago

luciansmith commented 1 year ago

Contact Details

lpsmith@uw.edu

Location

runBiosimulations

What happened?

Uploaded Figure10.zip and it complained about tasks referencing models. This is an incorrect validation error: tasks can indeed reference models, and sometimes must reference models, especially when the task involves multiple models.

https://run.biosimulations.org/runs/63912ccf6686da037dc226df#tab=log

What made it happen?

Uploaded the omex file.

Version

Production (Deployed on a .org domain)

What browsers are you seeing the problem on?

Chrome

Relevant log output

`/root/archive.omex` is not a valid COMBINE/OMEX archive.
  - The SED-ML file at location `Figure10.sedml` is invalid.
    - Data generator `plot_0_0_0` is invalid.
      - Variable `task10b_____time` is invalid.
        - Variable should not reference a model.