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biosimulators / Biosimulators_utils

Utilities for building standardized command-line interfaces for biosimulation software packages
https://docs.biosimulators.org/Biosimulators_utils
MIT License
4 stars 6 forks source link

first pass #125

Closed CodeByDrescher closed 1 year ago

CodeByDrescher commented 1 year ago

Features

sonarcloud[bot] commented 1 year ago

Kudos, SonarCloud Quality Gate passed!    Quality Gate passed

Bug A 0 Bugs
Vulnerability A 0 Vulnerabilities
Security Hotspot A 0 Security Hotspots
Code Smell A 0 Code Smells

No Coverage information No Coverage information
0.0% 0.0% Duplication

codecov[bot] commented 1 year ago

Codecov Report

Base: 96.64% // Head: 96.58% // Decreases project coverage by -0.05% :warning:

Coverage data is based on head (6bf44b7) compared to base (3ac59ac). Patch coverage: 98.43% of modified lines in pull request are covered.

Additional details and impacted files ```diff @@ Coverage Diff @@ ## dev #125 +/- ## ========================================== - Coverage 96.64% 96.58% -0.06% ========================================== Files 83 88 +5 Lines 9292 9354 +62 ========================================== + Hits 8980 9035 +55 - Misses 312 319 +7 ``` | Flag | Coverage Δ | | |---|---|---| | unittests | `96.58% <98.43%> (-0.06%)` | :arrow_down: | Flags with carried forward coverage won't be shown. [Click here](https://docs.codecov.io/docs/carryforward-flags?utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=biosimulators#carryforward-flags-in-the-pull-request-comment) to find out more. | [Impacted Files](https://codecov.io/gh/biosimulators/Biosimulators_utils/pull/125?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=biosimulators) | Coverage Δ | | |---|---|---| | [biosimulators\_utils/ref/utils.py](https://codecov.io/gh/biosimulators/Biosimulators_utils/pull/125/diff?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=biosimulators#diff-Ymlvc2ltdWxhdG9yc191dGlscy9yZWYvdXRpbHMucHk=) | `93.46% <91.66%> (-0.20%)` | :arrow_down: | | [biosimulators\_utils/gh\_action/core.py](https://codecov.io/gh/biosimulators/Biosimulators_utils/pull/125/diff?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=biosimulators#diff-Ymlvc2ltdWxhdG9yc191dGlscy9naF9hY3Rpb24vY29yZS5weQ==) | `99.19% <100.00%> (+<0.01%)` | :arrow_up: | | [biosimulators\_utils/gh\_action/data\_model.py](https://codecov.io/gh/biosimulators/Biosimulators_utils/pull/125/diff?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=biosimulators#diff-Ymlvc2ltdWxhdG9yc191dGlscy9naF9hY3Rpb24vZGF0YV9tb2RlbC5weQ==) | `100.00% <100.00%> (ø)` | | | [biosimulators\_utils/globals.py](https://codecov.io/gh/biosimulators/Biosimulators_utils/pull/125/diff?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=biosimulators#diff-Ymlvc2ltdWxhdG9yc191dGlscy9nbG9iYWxzLnB5) | `100.00% <100.00%> (ø)` | | | [biosimulators\_utils/image.py](https://codecov.io/gh/biosimulators/Biosimulators_utils/pull/125/diff?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=biosimulators#diff-Ymlvc2ltdWxhdG9yc191dGlscy9pbWFnZS5weQ==) | `100.00% <100.00%> (ø)` | | | [biosimulators\_utils/simulator/io.py](https://codecov.io/gh/biosimulators/Biosimulators_utils/pull/125/diff?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=biosimulators#diff-Ymlvc2ltdWxhdG9yc191dGlscy9zaW11bGF0b3IvaW8ucHk=) | `100.00% <100.00%> (ø)` | | | [...osimulators\_utils/simulator\_registry/data\_model.py](https://codecov.io/gh/biosimulators/Biosimulators_utils/pull/125/diff?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=biosimulators#diff-Ymlvc2ltdWxhdG9yc191dGlscy9zaW11bGF0b3JfcmVnaXN0cnkvZGF0YV9tb2RlbC5weQ==) | `100.00% <100.00%> (ø)` | | | [biosimulators\_utils/simulator\_registry/query.py](https://codecov.io/gh/biosimulators/Biosimulators_utils/pull/125/diff?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=biosimulators#diff-Ymlvc2ltdWxhdG9yc191dGlscy9zaW11bGF0b3JfcmVnaXN0cnkvcXVlcnkucHk=) | `100.00% <100.00%> (ø)` | | | [biosimulators\_utils/utils/core.py](https://codecov.io/gh/biosimulators/Biosimulators_utils/pull/125/diff?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=biosimulators#diff-Ymlvc2ltdWxhdG9yc191dGlscy91dGlscy9jb3JlLnB5) | `100.00% <100.00%> (ø)` | | | [biosimulators\_utils/\_\_init\_\_.py](https://codecov.io/gh/biosimulators/Biosimulators_utils/pull/125/diff?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=biosimulators#diff-Ymlvc2ltdWxhdG9yc191dGlscy9fX2luaXRfXy5weQ==) | `100.00% <0.00%> (ø)` | | | ... and [3 more](https://codecov.io/gh/biosimulators/Biosimulators_utils/pull/125/diff?src=pr&el=tree-more&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=biosimulators) | | Help us with your feedback. Take ten seconds to tell us [how you rate us](https://about.codecov.io/nps?utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=biosimulators). Have a feature suggestion? [Share it here.](https://app.codecov.io/gh/feedback/?utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=biosimulators)

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