codecov[bot]
commented
11 months ago Codecov Report
Attention: 63 lines in your changes are missing coverage. Please review.
Comparison is base (
b8f5e6d) 95.67% compared to head (ec04479) 95.08%. Report is 1 commits behind head on dev.
Additional details and impacted files
```diff @@ Coverage Diff @@ ## dev #149 +/- ## ========================================== - Coverage 95.67% 95.08% -0.59% ========================================== Files 88 89 +1 Lines 9449 9607 +158 ========================================== + Hits 9040 9135 +95 - Misses 409 472 +63 ``` | [Flag](https://app.codecov.io/gh/biosimulators/Biosimulators_utils/pull/149/flags?src=pr&el=flags&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=biosimulators) | Coverage Δ | | |---|---|---| | [unittests](https://app.codecov.io/gh/biosimulators/Biosimulators_utils/pull/149/flags?src=pr&el=flag&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=biosimulators) | `95.08% <61.58%> (-0.59%)` | :arrow_down: | Flags with carried forward coverage won't be shown. [Click here](https://docs.codecov.io/docs/carryforward-flags?utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=biosimulators#carryforward-flags-in-the-pull-request-comment) to find out more. | [Files](https://app.codecov.io/gh/biosimulators/Biosimulators_utils/pull/149?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=biosimulators) | Coverage Δ | | |---|---|---| | [biosimulators\_utils/combine/exec.py](https://app.codecov.io/gh/biosimulators/Biosimulators_utils/pull/149?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=biosimulators#diff-Ymlvc2ltdWxhdG9yc191dGlscy9jb21iaW5lL2V4ZWMucHk=) | `90.24% <ø> (ø)` | | | [biosimulators\_utils/viz/io.py](https://app.codecov.io/gh/biosimulators/Biosimulators_utils/pull/149?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=biosimulators#diff-Ymlvc2ltdWxhdG9yc191dGlscy92aXovaW8ucHk=) | `100.00% <100.00%> (ø)` | | | [...osimulators\_utils/model\_lang/smoldyn/validation.py](https://app.codecov.io/gh/biosimulators/Biosimulators_utils/pull/149?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=biosimulators#diff-Ymlvc2ltdWxhdG9yc191dGlscy9tb2RlbF9sYW5nL3Ntb2xkeW4vdmFsaWRhdGlvbi5weQ==) | `83.72% <56.25%> (-16.28%)` | :arrow_down: | | [biosimulators\_utils/model\_lang/smoldyn/utils.py](https://app.codecov.io/gh/biosimulators/Biosimulators_utils/pull/149?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=biosimulators#diff-Ymlvc2ltdWxhdG9yc191dGlscy9tb2RlbF9sYW5nL3Ntb2xkeW4vdXRpbHMucHk=) | `78.49% <20.00%> (-21.51%)` | :arrow_down: | | [...s\_utils/model\_lang/smoldyn/simularium\_converter.py](https://app.codecov.io/gh/biosimulators/Biosimulators_utils/pull/149?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=biosimulators#diff-Ymlvc2ltdWxhdG9yc191dGlscy9tb2RlbF9sYW5nL3Ntb2xkeW4vc2ltdWxhcml1bV9jb252ZXJ0ZXIucHk=) | `70.49% <70.49%> (ø)` | |:umbrella: View full report in Codecov by Sentry.
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sonarcloud[bot]
What new features does this PR implement? Please summarize the features that this PR implements. As relevant, please indicate the issues that the PR closes.
simularium_converter.pyfile tobiosimulators_utils.model_lang.smoldyn.CombineArchivecommon object to store archive rootpath and set model/output filepaths for COMBINE/OMEX archives.BiosimulatorsDataConverterabstract base class interface for custom Biosimulator instances of thesimulariumio.TrajectoryDatainterface.BiosimulatorsDataConverternamedSmoldynDataConverterwhich is a custom implementation ofsimulariumio.SmoldynDataby way of thebiosimulators_utils.model_lang.smoldyn.validation.validate_modelmethod.generate_new_simularium_fileto handle the executable instances of theSmoldynDataConverterobject.How have you tested this PR? Please summarize the tests that you implemented to test this PR.