Recognize metadata for auto-generated SED-ML

biosimulators / Biosimulators_utils

Utilities for building standardized command-line interfaces for biosimulation software packages

https://docs.biosimulators.org/Biosimulators_utils

MIT License

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Recognize metadata for auto-generated SED-ML #77

Closed jonrkarr closed 2 years ago

jonrkarr commented 2 years ago

Part of biosimulations/biosimulations#3750

[ ] Identify an appropriate predicate to indicate computationally generated files
[ ] Expand BioSimulators-utils code to process this

jonrkarr commented 2 years ago

I haven't been able to find a great predicate for this. I considered terms in PROV, SEPIO, and others. I think a reasonable option is http://biomodels.net/model-qualifiers/isDerivedFrom. To annotate that a SED-ML file is automatically generated:

Add RDF triple:
- Subject: SED-ML file
- Predicate: http://biomodels.net/model-qualifiers/isDerivedFrom
- Object: Model file