biosinodx SCcaller issues - Githubissues

biosinodx / SCcaller

Single Cell Caller (SCcaller) - Identify single nucleotide variations (SNVs) from single cell sequencing data

GNU Affero General Public License v3.0

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Could I use the bulk DNA WES data of the same sample as a bulk reference?

#14 MinS1 opened 4 years ago
0
Hi,Xiao DongI heven't the corresponding bulk WGS data of the single cell WGS data. Could I

#13 MinS1 closed 4 years ago
0
AD field

#12 tamaraprieto opened 4 years ago
0
Fixed missing closing bracket in the filter header

#11 imilas closed 4 years ago
0
PL field in VCF output

#10 amkozlov opened 5 years ago
6
sccaller_v2.0.0.py: When choosing dbsnp, --bulk bulk_bamfile is required.

#9 linkmonica closed 4 years ago
2
What does "varreads" mean in the reason.txt file after run reasoning_v1.1.py?

#8 MinS1 closed 5 years ago
2
What does "varreads" mean in the reason.txt file after run reasoning_v1.0.py?

#7 MinS1 closed 5 years ago
0
NameError with script reasoning_v1.1.py

#6 Goatofmountain closed 5 years ago
1
Did you mean v1.21 or v1.2.1

#5 epruesse closed 5 years ago
7
Could it be applied in single cell RNAseq data?

#4 x811zou closed 5 years ago
6
variant allele fraction for homo-alt genotype is always 1?

#3 noushinquazi closed 5 years ago
23
Error when running reasoning_v1.0.py

#2 Jonathanyu2014 closed 6 years ago
5
Can SCcaller output VCF file apart from bed file?

#1 Jonathanyu2014 closed 6 years ago
1