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biospectrabysequencing / gbs_moa

Workflow for GBS in moa template format
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Spring cleaning required on main! #1

Closed cfljam closed 10 years ago

cfljam commented 10 years ago

Theses Moa examples are pretty dirty so a spring clean of logs and other stuff belonging in .gitignores is required on a dev branch

mdavy86 commented 10 years ago

Yes, currently what is in github is an instance (from a PFR filesystem), it needs to be a minimal class setup with ideally just the .moa/config for each step, and a installer script to set up on NZGL virtual machines. There is no point maintiaining the set of logs for example.

kiwiroy commented 10 years ago

This just requires a find . | grep -v {wanted} | xargs git rm && git commit -am 'spring clean' && git push origin master

mdavy86 commented 10 years ago

Done with;

find . -name .moa -type d -exec find {} -type f -or -type l \; | grep -v config | xargs git rm -rf && git commit -m'prune unwanted .moa files'

Just needs a build bash script for each moa step

$ moa new simple

kiwiroy commented 10 years ago

Looks like you need a pull request - your fork is 33 commits ahead.

mdavy86 commented 10 years ago

moa is also automatically interfacing locally and making commits so the streamlining has been undone in the fork .gitignore?

hdzierz commented 10 years ago

What about forking and helping out with teh cleaning?

mdavy86 commented 10 years ago

no, I already have a fork which already cleans in a automated way, all that is required in the repo is the .moa/config file to reconstruct all components. The fork was going to propogate those required changes

On Fri, Oct 24, 2014 at 2:23 PM, Helge Dzierzon notifications@github.com wrote:

What about forking and helping out with teh cleaning?

— Reply to this email directly or view it on GitHub https://github.com/biospectrabysequencing/gbs_moa/issues/1#issuecomment-60333153 .