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biospectrabysequencing / gbs_moa

Workflow for GBS in moa template format
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hands on doc => knitr #10

Closed mdavy86 closed 9 years ago

mdavy86 commented 9 years ago

Could have a docx template?

purl() of bare blocks does not extract code snippets, xml interfers with knitr chunks of the form;

and engine="asis" appears to strip newlines

kiwiroy commented 9 years ago

Use pandoc to create the docx template.

kiwiroy commented 9 years ago

Can those images be plantUML-ised?

mdavy86 commented 9 years ago

Yes, the knitr engine="dot" can also render graphviz (assuming installed), looks like plantUML uses graphviz, certainly very similar;

https://github.com/yihui/knitr-examples/blob/master/057-engine-dot.md

mdavy86 commented 9 years ago

empty knitr' file was an error I didn't notice