110 reads that cover of the AAAAAAAAAA region
100 reads will have GGGGGGGGG in them,
10 reads will cover TTTTTTTTT.
If we were to simply adding up the reads “naively” as they match the transcripts we would end up with:
200 reads matching AAAAAAAAAAGGGGGGGGG
110 reads matching AAAAAAAAAATTTTTTTTT
However, as I add "naively" I get:
110 reads with AAAAAAAAAA + 100 reads with GGGGGGGGG = 210 reads matching AAAAAAAAAAGGGGGGGGG
110 reads with AAAAAAAAAA + 10 reads with TTTTTTTTT = 120 reads matching AAAAAAAAAATTTTTTTTT
In the book it is written:
However, as I add "naively" I get: 110 reads with AAAAAAAAAA + 100 reads with GGGGGGGGG = 210 reads matching AAAAAAAAAAGGGGGGGGG 110 reads with AAAAAAAAAA + 10 reads with TTTTTTTTT = 120 reads matching AAAAAAAAAATTTTTTTTT