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biostars / biostar-handbook

Issue tracker for the Biostar Handbook
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samtools: library not loaded #123

Closed kwhiggins27 closed 4 years ago

kwhiggins27 commented 4 years ago

Hello! I'm trying to complete some of your exercises with samtools, but I keep getting the attached error message. I checked the directory where samtools is supposed to be saved, and it looks like the program is in there.

Screen Shot 2020-07-17 at 5 18 33 PM

ialbert commented 4 years ago

An unexpected error for sure, I too can reproduce it.

:ooks like a recent packaging error with bioconda, needs to be elevated on their side.

Until they take care of it install a previous version of samools, for me that solved it:

conda install samtools==1.9
kwhiggins27 commented 4 years ago

Thanks very much!

ialbert commented 4 years ago

See also this:

https://github.com/bioconda/bioconda-recipes/issues/13488

ialbert commented 4 years ago

Actually you might want to pin samtools to 1.10

conda install samtools==1.10

as it is newer. The main installation has been updated to pin to this version.