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Issue tracker for the Biostar Handbook
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Setting up conda #151

Closed srmcpher closed 2 years ago

srmcpher commented 3 years ago

Hi, I have been trying to set up my computer to get started on the handbook but I seem to be struggling with setting up or activating conda. I set up the environment following the instructions as stated and it seemed to be working like it said it would. However, when I closed the terminal and opened a new terminal it said the command was not found. When I tried to set up the environment again it said that it was already set up and I can only update so I am not sure what I did wrong or if there is just an issue.

Appreciate any help!

ialbert commented 3 years ago

this sounds like the path was not set quite right, what gets printed when you do a:

~/miniconda3/bin/conda init
srmcpher commented 3 years ago

This is what comes out: -bash: /home/srmcpher/miniconda/bin/conda: No such file or directory

ialbert commented 3 years ago

please note that the command had miniconda3 in it,

whereas your command only has miniconda

srmcpher commented 3 years ago

Sorry, forgot to add that, this is what comes out with miniconda3: no change /home/srmcpher/miniconda3/condabin/conda no change /home/srmcpher/miniconda3/bin/conda no change /home/srmcpher/miniconda3/bin/conda-env no change /home/srmcpher/miniconda3/bin/activate no change /home/srmcpher/miniconda3/bin/deactivate no change /home/srmcpher/miniconda3/etc/profile.d/conda.sh no change /home/srmcpher/miniconda3/etc/fish/conf.d/conda.fish no change /home/srmcpher/miniconda3/shell/condabin/Conda.psm1 no change /home/srmcpher/miniconda3/shell/condabin/conda-hook.ps1 no change /home/srmcpher/miniconda3/lib/python3.8/site-packages/xontrib/conda.xsh no change /home/srmcpher/miniconda3/etc/profile.d/conda.csh no change /home/srmcpher/.bashrc No action taken.

ialbert commented 2 years ago

There is now a new page with step-by-step installation instructions for troubleshooting the quick setup

https://www.biostarhandbook.com/step-by-step.html