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biostars / biostar-handbook

Issue tracker for the Biostar Handbook
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make vcf error (doctor.py in working order) #168

Closed eotf closed 2 years ago

eotf commented 2 years ago

Hello, I am getting this error after trying to run through the introductory exercise.

$ make vcf mkdir -p reads fastq-dump -F -X 10000 --split-files -O reads SRR1553425 Failed to call external services. make: *** [Makefile:110: reads/SRR1553425_1.fastq] Error 64

Any suggestions? Im on Ubuntu Win 10.

ialbert commented 2 years ago

It sounds like some problems with your internet connection:

https://github.com/ncbi/sra-tools/issues/302

ialbert commented 2 years ago

Also:

https://www.biostars.org/p/9475091/

eotf commented 2 years ago

Thank you. Just fyi, I had so much trouble with WSL (went through all the SSL, mamba, and HTTPS error posts) that I ended up doing a fresh Ubuntu install on my old laptop and everything works perfectly there.