Originally posted by **heihaheihaha** February 11, 2023
I follow the step-by-step instructions to install software in my macbook (M2), after activate the bioinfo environment, at the next step, I meet this problem:
$ curl -s http://data.biostarhandbook.com/install/conda.txt | xargs mamba install -q -y
Could not solve for environment specs
Encountered problems while solving:
- nothing provides requested seqkit
- nothing provides requested minimap2
- nothing provides requested bwa
- nothing provides requested bowtie2
- nothing provides requested emboss
- nothing provides requested bedtools
- nothing provides requested samtools >=1.14
- nothing provides requested sra-tools
- nothing provides requested seqtk
- nothing provides requested datamash
- nothing provides requested bcftools
- nothing provides requested freebayes
- nothing provides requested subread
- nothing provides requested bioawk
- nothing provides requested hisat2
- nothing provides requested blast
- nothing provides requested mafft
- nothing provides requested ucsc-bedgraphtobigwig
- nothing provides requested csvtk
- nothing provides requested fastp
The environment can't be solved, aborting the operation
I've tried to google this, but it didn't give me any useful solutions, it seems that something is wrong with my miniconda, so I reinstall it and get the same.
I would appreciate it if anyone can give me some suggestions.
Discussed in https://github.com/biostars/biostar-handbook/discussions/253