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biostars / biostar-handbook

Issue tracker for the Biostar Handbook
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macOS Installation Issues #338

Closed hngu09 closed 1 month ago

hngu09 commented 1 month ago

I have a MacBook Pro with an M1 Pro on macOS 15.0. Both the install script and step-by-step installation get stuck on the same step which is initializing the shell. Here's what happens:

hungs-MBP:~ hngu$ ./bin/micromamba shell init -s bash -p ~/micromamba -q
The following argument was not expected: -p
Run with --help for more information.

Any idea of what's happening here?

ialbert commented 1 month ago

Sorry about that, looks like micromamba suddenly changed a parameter, with the new release of micromamba version 2.0 the -p is not accepted anymore it should be -r (before it could be both -p and -r probably for historical reasons).

I have updated the install script, it show work now,

I will need to also test the install on a brand-new system to make sure nothing else changed.

hngu09 commented 1 month ago

If it saves you any concern, the install script works perfectly fine now. Thank you for your help!

ialbert commented 1 month ago

Good to hear.

Thanks for reporting! This error would have affected just about everyone starting today. So it was quite timely and fortuitous that I became aware of the problem right away.