Unclear format for External Validate files

biostat0903 / DBSLMM

Deterministic Bayesian Sparse Linear Mixed Model

https://biostat0903.github.io/DBSLMM/

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Unclear format for External Validate files #11

Closed brycerowland closed 3 years ago

brycerowland commented 4 years ago

Hi Sheng,

Could you please clarify the format for the external summary statistics files? There is no clear guidance in the External Validate section of the DBSLMM manual. I assume that the columns are ID, effect allele, allele frequency, and the 4th column is either effect size or z statistic. Thanks!

Best, Bryce

brycerowland commented 3 years ago

Hi Sheng,

Can you please advise?

Best, Bryce

biostat0903 commented 3 years ago

Hi Bryce , Sorry for the late response. We have updated the new version for external function. You can try to use it. If there is any problem, please feel free to ask me. I will response you as soon as possible. Best, Sheng