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biosurf / cyCombine

Robust Integration of Single-Cell Cytometry Datasets
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Adding `biocViews:` to DESCRIPTION for installing bioconductor dependences. #53

Open AbeKh opened 1 month ago

AbeKh commented 1 month ago

I get an error when installing cyCombine via remotes:: :

error: ERROR: dependency ‘sva’ is not available for package ‘cyCombine’

sva is a bioconductor package, so DESCRIPTION needs to point to bioconductor to install such packages. Check this answer on stackexchange for reference.

shdam commented 1 month ago

Thanks Abe!

I was not aware of this trick. I tried to solve it with setRepositories(ind = c(1:6, 8)), but the biocViews is much neater.

I added it to the DESCRIPTION on the dev branch, which also features some performance upgrades. I am still actively developing on the upgrades, so please let me know if you run into issues or have suggestions :)

Thanks for using cyCombine!

Best regards, Søren