(
# reaction and metabolite aes correspond to their identifiers
ggmap(df, map_file, aes(metabolite="metabolite", reaction="reaction", size="flux", x="kcat")) +
geom_arrow() + # will use size and reaction
geom_metabolite(aes(size="concentration")) + # will use size and metabolite
geom_box() + # will use reaction and kcat, boxplot at one right of reactions
geom_kde(aes(x="km"), side="left") + # will use reaction and kms, plotted on the other side
scale_color_continuous(min="blue", max="red") +
scale_circle_size(min=10., max=45.)
)
As a initial step (if librification of bevy app + pyo3 turns out too complicated), generating an input file as accepted by ReactionData and MetaboliteData should be OK.
As in the schema in the README:
As a initial step (if librification of bevy app + pyo3 turns out too complicated), generating an input file as accepted by
ReactionData
andMetaboliteData
should be OK.