search

biotaphy / projects

A place for tools for various BiotaPhy projects
GNU General Public License v3.0
0 stars 1 forks source link

Generate SDMs using Saxifragales 12 layer climate data #8

Closed cjgrady closed 2 years ago

cjgrady commented 3 years ago

The first set was done with the Worldclim climate dataset but we want to use the 12 layer subset instead

cjgrady commented 3 years ago

These are currently running on our old production machine.

cjgrady commented 3 years ago

FYI @ryanafolk some of our cluster nodes were having some problems and were not working on the models. This has slowed it down considerably. This is probably the last project to use the yeti cluster as we have migrated to new machines for Lifemapper so maintenance on this cluster is minimal. I was able to restore about 20 additional workers and that has restored a good chunk of concurrency to the computations so they are moving along at a decent pace again (maybe 30,000 a day or so). I'll try to eke out a bit more so that these computations finish by early next week.

ryanafolk commented 3 years ago

Great -- sounds awesome!

cjgrady commented 2 years ago

Models are finished and being prepped for the next step

ryanafolk commented 2 years ago

Woohoo!!

Ryan A. Folk Assistant Professor and Herbarium Curator Department of Biological Sciences Mississippi State University 295 E. Lee Blvd. P.O. Box GY Mississippi State, MS 39762 http://www.ryanafolk.com

On Nov 9, 2021, at 1:17 PM, CJ Grady @.**@.>> wrote:

Models are finished and being prepped for the next step

— You are receiving this because you were mentioned. Reply to this email directly, view it on GitHubhttps://secure-web.cisco.com/1cdq382UsXZQ0pzQiCLt8fomVozdliyKrtYrxw_IF8BLMpt6wRDDtt7K-74T0Lpf8OlJjVJJzNz4CcyvmkX1EsD3_lEszdOeFSdndDDHCb8NPhHOJFJb-X5wA3oIAiAw6eDNWmnqqGpgWR7v-PLRBI_d3w9nHlyiMxd7JsUfb2TzLFotiW_JtefDW8sVTgBxrzhjkpQ7S6psMTqSS_JdcilMk_eElL0I4jqUgB_xJJccq_rWcvWzxQPnF8oa3DxKHuLT78N7nLhLUIfZ17TxoNtapVCqpm5OLMGWqXwavqJSGsLovnT4J9RJG6rkDiUbs/https%3A%2F%2Fgithub.com%2Fbiotaphy%2Fprojects%2Fissues%2F8%23issuecomment-964457704, or unsubscribehttps://secure-web.cisco.com/1Hs8rFcc9JaNTdArNa3lWqOtIWj8SjHpwRXGLQNPM0sRmaMRdEO1JFjvXKNG6SFV1Kbub5tSOCLawstpG1P1ndGoMTjGYzQ2wPsDsOtE7kdK8iTAspzt5jZZGjOvJbpL9a3NK1WOhbtfDPmYWJzdRb-JF2q8Vyo4bX_VCyEjqCyoemjjPBWi6expsH3Az8p-dUqBSnXBp0URGPmvsVxdUZSF24gxuC6VUcEaiOkdxwCNAKlys0QY3Lc41y4TH9g8kbjpwQByLXgyvO0SdDnlQBTJJOj4Fcsaoy_9euw5WfAOfsVmF7ON6wDJGmFjrq6CP/https%3A%2F%2Fgithub.com%2Fnotifications%2Funsubscribe-auth%2FADT7E7FAUACEGGQ4LEFOHCLULFXTLANCNFSM5G74BC5Q. Triage notifications on the go with GitHub Mobile for iOShttps://secure-web.cisco.com/1VXiUyuYc2Fv8BE0HV8gqmw6WnmKLUQVCq4nTp0OKekROk3p4KfLHbvZ1rq5cNZruApYQSVRyuPVvmOcjdIGFWbTk8Y_qpVFdI1fQkGgPBdF1YpxkfXozdrgxVyLRssGQAiCU5t45cLPu1PI8af-MQqmutbkEDGg8YEl2OoKIcRUIDEIqr0SyfBlnR3cAcFYd9w3cqHKF7ia2WrGdrxQYlDy6XMWwa9RMVwjCtXajBKW7HwcSWe9kuY29XP3KS7EynRCCT-jidAktc_uablp0sumEWV7EdIC8RW0QqOJ749P8BSsKL3wqwDxpBIh5cHZs/https%3A%2F%2Fapps.apple.com%2Fapp%2Fapple-store%2Fid1477376905%3Fct%3Dnotification-email%26mt%3D8%26pt%3D524675 or Androidhttps://secure-web.cisco.com/16k1U8Wgfj_SbT1ZAU80WXp58L_aP2I4DN9JFjXvJXFpFLbky0HLmACDjm6k_QV71obBZgQDVtN5EYX97HfIfG7nI3rW9OQGoggn2Kr0jndwjCovvz8ChWagE_mpHpMOFWyAz5dOvR_EIN5piFAtifSU-jeRDvzcmNHnjCGT01pIkrfMnD0sVgG6K6JG3b8jL4U806qqwPDaqbE7BR8i2wRXKw1MCI5MGuXdjXvPDhenbHkcW1EkOQNSK-1fk7N2tZWDS7V67LcVFlfDbczdFeHVJ1N4KGZX4uoUjm4jyaL919GpOo8MCXNGnx23768Gy/https%3A%2F%2Fplay.google.com%2Fstore%2Fapps%2Fdetails%3Fid%3Dcom.github.android%26referrer%3Dutm_campaign%253Dnotification-email%2526utm_medium%253Demail%2526utm_source%253Dgithub.

cjgrady commented 2 years ago

Reopening this issue. I have completed models for everything but creating the PAM from them is taking too long. So, I reset the models with 5 minute data (instead of 2.5 minute) and included the pre- and post- processing steps when they are created. This will end up speeding up the entire process and I expect that they will finish later this week.