Open colleenXu opened 5 months ago
I get 500 errors when trying to use jmespath for the following queries.
[GET version](https://mychem.info/v1/query?size=1000&fields=chembl.molecule_chembl_id,chembl.drug_mechanisms&filter=chembl.drug_mechanisms.target_components.uniprot:Q16602&jmespath=chembl.drug_mechanisms.target_components%7C%5B?uniprot==%27Q16602%27%5D) POST version: ``` curl --location --globoff 'https://mychem.info/v1/query?size=1000&fields=chembl.molecule_chembl_id,chembl.drug_mechanisms&jmespath=chembl.drug_mechanisms.target_components|[?uniprot=='Q16602']' \ --header 'Content-Type: application/json' \ --data '{ "q": ["Q16602"], "scopes": ["chembl.drug_mechanisms.target_components.uniprot"] }' ```
[GET version](https://myvariant.info/v1/query?size=1000&fields=civic.entrez_id,civic.evidence_items&jmespath=civic.evidence_items.disease%7C%5B?doid==%27DOID:9256%27%5D&filter=civic.evidence_items.disease.doid:%22DOID:9256%22) POST version: ``` curl --location --globoff 'https://myvariant.info/v1/query?size=1000&fields=civic.entrez_id,civic.evidence_items&jmespath=civic.evidence_items.disease|[?doid=='DOID:9256']' \ --header 'Content-Type: application/json' \ --data '{ "q": "DOID:9256", "scopes": "civic.evidence_items.disease.doid" }' ```
My guess is that this error has to do with how these fields are nested (two layers with arrays of objects?)
Assigning to myself to review and see if this is fixed.
I get 500 errors when trying to use jmespath for the following queries.
MyChem Query for specific chembl.drug_mechanism gene, trying to keep only matching chembl.drug_mechanism info
[GET version](https://mychem.info/v1/query?size=1000&fields=chembl.molecule_chembl_id,chembl.drug_mechanisms&filter=chembl.drug_mechanisms.target_components.uniprot:Q16602&jmespath=chembl.drug_mechanisms.target_components%7C%5B?uniprot==%27Q16602%27%5D) POST version: ``` curl --location --globoff 'https://mychem.info/v1/query?size=1000&fields=chembl.molecule_chembl_id,chembl.drug_mechanisms&jmespath=chembl.drug_mechanisms.target_components|[?uniprot=='Q16602']' \ --header 'Content-Type: application/json' \ --data '{ "q": ["Q16602"], "scopes": ["chembl.drug_mechanisms.target_components.uniprot"] }' ```
Query for specific civic.evidence_items.disease, trying to keep only matching civic.evidence_items info
[GET version](https://myvariant.info/v1/query?size=1000&fields=civic.entrez_id,civic.evidence_items&jmespath=civic.evidence_items.disease%7C%5B?doid==%27DOID:9256%27%5D&filter=civic.evidence_items.disease.doid:%22DOID:9256%22) POST version: ``` curl --location --globoff 'https://myvariant.info/v1/query?size=1000&fields=civic.entrez_id,civic.evidence_items&jmespath=civic.evidence_items.disease|[?doid=='DOID:9256']' \ --header 'Content-Type: application/json' \ --data '{ "q": "DOID:9256", "scopes": "civic.evidence_items.disease.doid" }' ```
My guess is that this error has to do with how these fields are nested (two layers with arrays of objects?)