SEMMEDDB:ASSOCIATED_WITH isn't mapped to related to anymore. It looks like we should use the new predicate associated_with
SEMMEDDB:USES is mapped to has_input....so that would add this predicate to the operations...
we can use the new predicates diagnoses (inverse: is diagnosed by) for SEMMEDDB:diagnoses....right now we are using related_to...
categories/ node types: STY:T037 (semmed, injury or poisoning) and STY:T046 (semmed, Pathologic Function) no longer mapped to Disease. Instead, they're mapped to pathological entity mixin.
New predicates:
associated with
associated with sensitivity to (inverse: sensitivity associated with)
associated with resistance to (inverse: resistance associated with)
diagnoses (inverse: is diagnosed by)
disease has location
has plasma membrane part (inverse: plasma membrane part of)
composed_primarily_of
Renamed predicates:
co-occurs in literature with changed to occurs together in literature with
Note: will update SEMMEDDB x-bte soon. This is what I did
same as what I said above:
map SEMMEDDB:diagnoses to new predicate diagnoses (w/ inverse "is diagnosed by") rather than using related_to
map categories/ node types: STY:T037 (semmed, injury or poisoning) and STY:T046 (semmed, Pathologic Function) to PathologicalEntity (which is actually a mixin hmmmmm). Previously they were mapped to Disease
different from what I said above:
keep SEMMEDDB:ASSOCIATED_WITH mapped to related_to (decided not to use the new predicate associated_with).
didn't make operations with SEMMEDDB:USES (didn't look useful)
https://github.com/biolink/biolink-model/compare/2.2.8...2.2.13
Changes we'd make for x-bte annotation: SEMMED
SEMMEDDB:ASSOCIATED_WITH
isn't mapped torelated to
anymore. It looks like we should use the new predicateassociated_with
SEMMEDDB:USES
is mapped tohas_input
....so that would add this predicate to the operations...diagnoses
(inverse:is diagnosed by
) for SEMMEDDB:diagnoses....right now we are usingrelated_to
...STY:T037
(semmed, injury or poisoning) andSTY:T046
(semmed, Pathologic Function) no longer mapped to Disease. Instead, they're mapped topathological entity mixin
.New predicates:
associated with
associated with sensitivity to
(inverse:sensitivity associated with
)associated with resistance to
(inverse:resistance associated with
)diagnoses
(inverse:is diagnosed by
)disease has location
has plasma membrane part
(inverse:plasma membrane part of
)Renamed predicates:
co-occurs in literature with
changed tooccurs together in literature with
New categories / node types: