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biothings / biothings_explorer_archived

BioThings Explorer: a schema-based client for API interoperability
Apache License 2.0
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create pull requests / issues on BioLink Model to allow retirement of `bts` namespace #86

Open andrewsu opened 4 years ago

andrewsu commented 4 years ago

We use the bts namespace for many predicates that don't exist within the BioLink Model. Would be good to create the necessary pull requests / issues on BioLink Model to allow retirement of the bts namespace.

andrewsu commented 3 years ago

https://github.com/biolink/biolink-model/pull/396

kevinxin90 commented 3 years ago

Current predicates used in BTE but not available in Biolink yet:

affected_by (inverse of affects)

contraindicated_by (inverse of contraindicated for)

disrupted_by (inverse of disrupts)

manifested_by (inverse of manifestation of)

metabolic_processing_affected_by (recently changed to affects metabolic processing of -> need to update smartapi）

metabolize (change to affects metabolic processing of)

negatively_regulated_by (inverse of negatively regulates)

positively_regulated_by (inverse of positively regulates)

prevented_by (inverse of prevents)

regulated_by (inverse of regulates)

kevinxin90 commented 3 years ago

Pull request made to biolink model github repo, waiting to be merged:

https://github.com/biolink/biolink-model/pull/571