functionality to allow for individual or bulk item download

[rshabman]

Is your feature request related to a problem? Please describe. I'd like to be able to download registered dataset metadata into a document for offline analysis (e.g. CSV or xls)

Describe the solution you'd like Check boxes next to datasets with a download function

Describe alternatives you've considered n/a

Additional context at present, critical analysis of the datasets is not easy on the website and requires moving to the data to another analysis platform. Until a knowledgebase the consumes the NIAID datasets/tools exists, the ability to download will enhance usability as well as broader uptake in the community.

[marcodarko]

I've enabled a working version of this feature on the registry, feel free to try it out. Let me know if you encounter any issues.

[rshabman]

Thanks! The download feature works nicely. For me I can use the data when it's in a csv format so I can put in excel. I imagine there is a way to quickly convert?

From: Marco Cano @.> Sent: Wednesday, June 15, 2022 5:53 PM To: biothings/discovery-app @.> Cc: Shabman, Reed (NIH/NIAID) [E] @.>; Author @.> Subject: [EXTERNAL] Re: [biothings/discovery-app] functionality to allow for individual or bulk item download (Issue #156)

I've enabled a working version of this feature on the registry, feel free to try it out. Let me know if you encounter any issues.

- Reply to this email directly, view it on GitHubhttps://gcc02.safelinks.protection.outlook.com/?url=https%3A%2F%2Fgithub.com%2Fbiothings%2Fdiscovery-app%2Fissues%2F156%23issuecomment-1156982652&data=05%7C01%7Creed.shabman%40nih.gov%7C60ad4552c4154073d4ca08da4f196856%7C14b77578977342d58507251ca2dc2b06%7C0%7C0%7C637909267781548182%7CUnknown%7CTWFpbGZsb3d8eyJWIjoiMC4wLjAwMDAiLCJQIjoiV2luMzIiLCJBTiI6Ik1haWwiLCJXVCI6Mn0%3D%7C3000%7C%7C%7C&sdata=McILVJOYhTCqbKwmeW19hCYsnnsTtFB96TuZpxUX3Ug%3D&reserved=0, or unsubscribehttps://gcc02.safelinks.protection.outlook.com/?url=https%3A%2F%2Fgithub.com%2Fnotifications%2Funsubscribe-auth%2FANOLSYRUPY74PBDLVKVGLVDVPJGDNANCNFSM5YNVJI3Q&data=05%7C01%7Creed.shabman%40nih.gov%7C60ad4552c4154073d4ca08da4f196856%7C14b77578977342d58507251ca2dc2b06%7C0%7C0%7C637909267781548182%7CUnknown%7CTWFpbGZsb3d8eyJWIjoiMC4wLjAwMDAiLCJQIjoiV2luMzIiLCJBTiI6Ik1haWwiLCJXVCI6Mn0%3D%7C3000%7C%7C%7C&sdata=E9vaF6fgHIn6ep95MeP%2FX6fLBNpg%2B4gJiOU8vz9ucAQ%3D&reserved=0. You are receiving this because you authored the thread.Message ID: @.**@.>> CAUTION: This email originated from outside of the organization. Do not click links or open attachments unless you recognize the sender and are confident the content is safe.

[marcodarko]

I'll look into it and add it as an option if I can get good results. TY!

[rshabman]

Thanks! Really appreciate you looking into this.

Reed

From: Marco Cano @.> Sent: Wednesday, June 15, 2022 6:14 PM To: biothings/discovery-app @.> Cc: Shabman, Reed (NIH/NIAID) [E] @.>; Author @.> Subject: [EXTERNAL] Re: [biothings/discovery-app] functionality to allow for individual or bulk item download (Issue #156)

I'll look into it and add it as an option if I can get good results. TY!

- Reply to this email directly, view it on GitHubhttps://gcc02.safelinks.protection.outlook.com/?url=https%3A%2F%2Fgithub.com%2Fbiothings%2Fdiscovery-app%2Fissues%2F156%23issuecomment-1157003992&data=05%7C01%7Creed.shabman%40nih.gov%7C6751aeace5254d77185608da4f1c4b54%7C14b77578977342d58507251ca2dc2b06%7C0%7C0%7C637909280182063271%7CUnknown%7CTWFpbGZsb3d8eyJWIjoiMC4wLjAwMDAiLCJQIjoiV2luMzIiLCJBTiI6Ik1haWwiLCJXVCI6Mn0%3D%7C3000%7C%7C%7C&sdata=%2FAmfWoh2ml8MVrQta7TQPmLR6fdEZkfbSJulzQdA1kY%3D&reserved=0, or unsubscribehttps://gcc02.safelinks.protection.outlook.com/?url=https%3A%2F%2Fgithub.com%2Fnotifications%2Funsubscribe-auth%2FANOLSYUBSFVTV6VRBIUTV5TVPJIQZANCNFSM5YNVJI3Q&data=05%7C01%7Creed.shabman%40nih.gov%7C6751aeace5254d77185608da4f1c4b54%7C14b77578977342d58507251ca2dc2b06%7C0%7C0%7C637909280182063271%7CUnknown%7CTWFpbGZsb3d8eyJWIjoiMC4wLjAwMDAiLCJQIjoiV2luMzIiLCJBTiI6Ik1haWwiLCJXVCI6Mn0%3D%7C3000%7C%7C%7C&sdata=hB1Frbbk2hvRptD23K%2Ft9A3M0lJl%2FpxdNmpecGCepXw%3D&reserved=0. You are receiving this because you authored the thread.Message ID: @.**@.>> CAUTION: This email originated from outside of the organization. Do not click links or open attachments unless you recognize the sender and are confident the content is safe.

[marcodarko]

@rshabman feature has been added. Please note that since we have multiple levels of nesting some paths will be flattened. Check it out, hopefully this takes care of this issue for you!

[rshabman]

This is great, thank you! Will make it easier to analyze what's uploaded.

Thanks again for working on this feature.

Reed

From: Marco Cano @.> Sent: Friday, June 17, 2022 1:49 PM To: biothings/discovery-app @.> Cc: Shabman, Reed (NIH/NIAID) [E] @.>; Mention @.> Subject: [EXTERNAL] Re: [biothings/discovery-app] functionality to allow for individual or bulk item download (Issue #156)

@rshabmanhttps://gcc02.safelinks.protection.outlook.com/?url=https%3A%2F%2Fgithub.com%2Frshabman&data=05%7C01%7Creed.shabman%40nih.gov%7Cde34c6486456479bc96a08da5089bd7f%7C14b77578977342d58507251ca2dc2b06%7C0%7C0%7C637910849775538586%7CUnknown%7CTWFpbGZsb3d8eyJWIjoiMC4wLjAwMDAiLCJQIjoiV2luMzIiLCJBTiI6Ik1haWwiLCJXVCI6Mn0%3D%7C3000%7C%7C%7C&sdata=tJ48Auy%2FpMcd4K0WD4QzphluID2ilUrSGc0u6%2BHoRmk%3D&reserved=0 feature has been added. Please note that since we have multiple levels of nesting some paths will be flattened. Check it out, hopefully this takes care of this issue for you!

- Reply to this email directly, view it on GitHubhttps://gcc02.safelinks.protection.outlook.com/?url=https%3A%2F%2Fgithub.com%2Fbiothings%2Fdiscovery-app%2Fissues%2F156%23issuecomment-1159107434&data=05%7C01%7Creed.shabman%40nih.gov%7Cde34c6486456479bc96a08da5089bd7f%7C14b77578977342d58507251ca2dc2b06%7C0%7C0%7C637910849775538586%7CUnknown%7CTWFpbGZsb3d8eyJWIjoiMC4wLjAwMDAiLCJQIjoiV2luMzIiLCJBTiI6Ik1haWwiLCJXVCI6Mn0%3D%7C3000%7C%7C%7C&sdata=AeMW92caxQtAtLWAB3eQ1zjVvUQrrUni4%2FxVGJQmSg8%3D&reserved=0, or unsubscribehttps://gcc02.safelinks.protection.outlook.com/?url=https%3A%2F%2Fgithub.com%2Fnotifications%2Funsubscribe-auth%2FANOLSYVKX52MUU4JPOJPA3DVPS3CRANCNFSM5YNVJI3Q&data=05%7C01%7Creed.shabman%40nih.gov%7Cde34c6486456479bc96a08da5089bd7f%7C14b77578977342d58507251ca2dc2b06%7C0%7C0%7C637910849775694774%7CUnknown%7CTWFpbGZsb3d8eyJWIjoiMC4wLjAwMDAiLCJQIjoiV2luMzIiLCJBTiI6Ik1haWwiLCJXVCI6Mn0%3D%7C3000%7C%7C%7C&sdata=XEnlk1RbZSDWWNq%2BU5TyZRhD4H3FE9NS%2FPU1c9ex8Ao%3D&reserved=0. You are receiving this because you were mentioned.Message ID: @.**@.>> CAUTION: This email originated from outside of the organization. Do not click links or open attachments unless you recognize the sender and are confident the content is safe.

[rshabman]

Good morning! Thanks again for all the work on this site. A few comments, and please let me know if I should enter in the github ticket area instead (lost the link at the moment).

1) the .csv download function isn't user friendly. I initially tried a single dataset download - figured I could create a macro to clean it up to save effort on your end. When I tried downloading two datasets, the data doesn't appear on separate rows. At present the .csv download feature isn't usable.

Maybe delete the .csv download feature until it's resolved?

2- Re: download - if we link to a pathogen, or measurement technique, that text isn't searchable (i.e. the search is only working for what was entered in the title and description). Can the ontology result (not just the link) be displayed when an ontology link is provided?

Many thanks!

Reed

From: Shabman, Reed (NIH/NIAID) [E] Sent: Wednesday, June 15, 2022 5:58 PM To: biothings/discovery-app @.>; biothings/discovery-app @.> Cc: Author @.***> Subject: RE: [EXTERNAL] Re: [biothings/discovery-app] functionality to allow for individual or bulk item download (Issue #156)

Thanks! The download feature works nicely. For me I can use the data when it's in a csv format so I can put in excel. I imagine there is a way to quickly convert?

From: Marco Cano @.**@.>> Sent: Wednesday, June 15, 2022 5:53 PM To: biothings/discovery-app @.**@.>> Cc: Shabman, Reed (NIH/NIAID) [E] @.**@.>>; Author @.**@.>> Subject: [EXTERNAL] Re: [biothings/discovery-app] functionality to allow for individual or bulk item download (Issue #156)

I've enabled a working version of this feature on the registry, feel free to try it out. Let me know if you encounter any issues.

- Reply to this email directly, view it on GitHubhttps://gcc02.safelinks.protection.outlook.com/?url=https%3A%2F%2Fgithub.com%2Fbiothings%2Fdiscovery-app%2Fissues%2F156%23issuecomment-1156982652&data=05%7C01%7Creed.shabman%40nih.gov%7C60ad4552c4154073d4ca08da4f196856%7C14b77578977342d58507251ca2dc2b06%7C0%7C0%7C637909267781548182%7CUnknown%7CTWFpbGZsb3d8eyJWIjoiMC4wLjAwMDAiLCJQIjoiV2luMzIiLCJBTiI6Ik1haWwiLCJXVCI6Mn0%3D%7C3000%7C%7C%7C&sdata=McILVJOYhTCqbKwmeW19hCYsnnsTtFB96TuZpxUX3Ug%3D&reserved=0, or unsubscribehttps://gcc02.safelinks.protection.outlook.com/?url=https%3A%2F%2Fgithub.com%2Fnotifications%2Funsubscribe-auth%2FANOLSYRUPY74PBDLVKVGLVDVPJGDNANCNFSM5YNVJI3Q&data=05%7C01%7Creed.shabman%40nih.gov%7C60ad4552c4154073d4ca08da4f196856%7C14b77578977342d58507251ca2dc2b06%7C0%7C0%7C637909267781548182%7CUnknown%7CTWFpbGZsb3d8eyJWIjoiMC4wLjAwMDAiLCJQIjoiV2luMzIiLCJBTiI6Ik1haWwiLCJXVCI6Mn0%3D%7C3000%7C%7C%7C&sdata=E9vaF6fgHIn6ep95MeP%2FX6fLBNpg%2B4gJiOU8vz9ucAQ%3D&reserved=0. You are receiving this because you authored the thread.Message ID: @.**@.>> CAUTION: This email originated from outside of the organization. Do not click links or open attachments unless you recognize the sender and are confident the content is safe.

[flaneuse]

@marcodarko @rshabman point 2 (about controlled vocabs) is captured in ticket #150.

[marcodarko]

@rshabman if you wanna open an issue for point 1 that would be great, add some details on how I can reproduce the issue so I can see if it's UI issue or not. (I did try it on my end but I do see create separate rows so I wanna see how I can replicate this bug). Feel free to suggest any ideas on how I can make the UI more useful to you so I can take that into consideration.

[rshabman]

@marcodarko - i just tried again and this time when i download it looks good. So please close the ticket and thanks for creating this functionality! I will open a new ticket if/when i have additional suggestions for this tool since it's important for me as i capture the landscape of these data.