biothings / mygene.info

MyGene.info: A BioThings API for gene annotations
http://mygene.info
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new data source: CellMarker #56

Open andrewsu opened 5 years ago

andrewsu commented 5 years ago

CellMarker: a manually curated resource of cell markers in human and mouse

Publication: https://academic.oup.com/nar/advance-article/doi/10.1093/nar/gky900/5115823 Download page: http://biocc.hrbmu.edu.cn/CellMarker/download.jsp

Head of human file:

speciesType tissueType2 cancerType  cellType    cellName3   cellMarker  geneSymbol  geneID  proteinName proteinID   markerResource  PMID    Company
Human   Kidney  Normal  Normal cell Proximal tubular cell   Intestinal Alkaline Phosphatase ALPI    248 PPBI    P09923  Experiment  9263997 NA
Human   Liver   Normal  Normal cell Ito cell (hepatic stellate cell)    Synaptophysin   SYP 6855    SYPH    P08247  Experiment  10595912    NA
Human   Endometrium Normal  Normal cell Trophoblast cell    CEACAM1 CEACAM1 634 CEAM1   P13688  Experiment  10751340    NA
Human   Germ    Normal  Normal cell Primordial germ cell    VASA    DDX4    54514   DDX4    Q9NQI0  Experiment  10920202    NA
Human   Corneal epithelium  Normal  Normal cell Epithelial cell KLF6    KLF6    1316    KLF6    Q99612  Experiment  12407152    NA
Human   Placenta    Normal  Normal cell Cytotrophoblast FGF10   FGF10   2255    FGF10   O15520  Experiment  15950061    NA
Human   Periosteum  Normal  Normal cell Periosteum-derived progenitor cell  CD166, CD45, CD9, CD90  ALCAM, PTPRC, CD9, THY1 214, 5788, 928, 7070    CD166, PTPRC, CD9, THY1 Q13740, P08575, P21926, P04216  Experiment  15977065    NA
Human   Amniotic membrane   Normal  Normal cell Amnion epithelial cell  NANOG, OCT3/4   NANOG, POU5F1   79923, 5460 NANOG, PO5F1    Q9H9S0, Q01860  Experiment  16081662    NA
Human   Primitive streak    Normal  Normal cell Primitive streak cell   LHX1, MIXL1 LHX1, MIXL1 3975, 83881 LHX1, MIXL1 P48742, Q9H2W2  Experiment  16258519    NA