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biothings / mygene.info

MyGene.info: A BioThings API for gene annotations
http://mygene.info
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ENSG00000268000 not found #60

Closed andrewsu closed 5 years ago

andrewsu commented 5 years ago

These two calls return nothing: http://mygene.info/v3/query?q=ENSG00000268000 http://mygene.info/v3/gene/ENSG00000268000

Gene exists in ensembl: http://grch37.ensembl.org/Homo_sapiens/Gene/Summary?g=ENSG00000268000

not sure if it's a true data issue, but logging it to investigate further...

sirloon commented 5 years ago

@andrewsu one possible explanation could be latest ensembl release is 95 according the link to their website, but we currently run 94. Not sure how to test this gene on release 94

andrewsu commented 5 years ago

good point. This gene history link http://grch37.ensembl.org/Homo_sapiens/Gene/Idhistory?g=ENSG00000268000;r=19:50003781-50004614;t=ENST00000602157 shows that it is currently on ENSG00000268000.1 (version 1), so perhaps it was only introduced in 95...

andrewsu commented 5 years ago

Looks like this explanation is correct. http://oct2018.archive.ensembl.org/Homo_sapiens/Gene/Idhistory?g=ENSG00000268000 (searching version 94) report "This identifier is not in the current EnsEMBL database." Thanks @sirloon!

andrewsu commented 5 years ago

... and just to note that links to archived ensembl versions is here: https://uswest.ensembl.org/info/website/archives/index.html