Open kevinxin90 opened 5 years ago
It seems the SMPDB ID (pathways) in MyGene.info is missing a couple of 0s.
For example, the "codeine action pathway" has an SMPDB ID: SMP0000405. (see http://smpdb.ca/view/SMP0000405).
But in MyGene.info, the ID is SMP00405. (see http://mygene.info/v3/query?q=pathway.smpdb.id:SMP00405&fields=pathway.smpdb).
Looks like CPDB (where we get pathway info from) is having the wrong information. We need to fix it in our CPDB parser.
It seems the SMPDB ID (pathways) in MyGene.info is missing a couple of 0s.
For example, the "codeine action pathway" has an SMPDB ID: SMP0000405. (see http://smpdb.ca/view/SMP0000405).
But in MyGene.info, the ID is SMP00405. (see http://mygene.info/v3/query?q=pathway.smpdb.id:SMP00405&fields=pathway.smpdb).
Looks like CPDB (where we get pathway info from) is having the wrong information. We need to fix it in our CPDB parser.