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biothings / mygeneset.info

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Data Source: Wikipathways #14

Closed ravila4 closed 3 years ago

ravila4 commented 3 years ago

Source homepage: https://www.wikipathways.org/index.php/WikiPathways Data download: http://data.wikipathways.org/current/gmt/

ravila4 commented 3 years ago

Project repo: https://github.com/ravila4/wikipathways

Sample schema:

{
  "_id": "WP23",
  "is_public": true,
  "taxid": 9606,
  "genes": [
    {
      "mygene_id": "4690",
      "ncbigene": "4690",
      "symbol": "NCK1",
      "name": "NCK adaptor protein 1",
      "ensemblgene": "ENSG00000158092"
    },
    {
      "mygene_id": "5781",
      "ncbigene": "5781",
      "symbol": "PTPN11",
      "name": "protein tyrosine phosphatase non-receptor type 11",
      "ensemblgene": "ENSG00000179295"
    },
    {
      "mygene_id": "11184",
      "ncbigene": "11184",
      "symbol": "MAP4K1",
      "name": "mitogen-activated protein kinase kinase kinase kinase 1",
      "ensemblgene": [
        "ENSG00000282928",
        "ENSG00000104814"
      ]
    },
 ....
    {
      "mygene_id": "8915",
      "ncbigene": "8915",
      "symbol": "BCL10",
      "name": "BCL10 immune signaling adaptor",
      "ensemblgene": "ENSG00000142867"
    }
  ],
  "wikipathways": {
    "id": "WP23",
    "pathway_name": "B Cell Receptor Signaling Pathway",
    "url": "http://www.wikipathways.org/instance/WP23_r108321"
  }
}