Open newgene opened 1 year ago
Somehow this particular MONDO ID does not exists in our mondo API:
https://biothings.ncats.io/mondo/disease/MONDO:0021145
(updated to MONDO version 2023-06-01)
Check the original mondo.obo file of that version, it does contains a record of MONDO:0021145:
mondo.obo
MONDO:0021145
[Term] id: MONDO:0021145 name: obsolete disorder of genitourinary system def: "OBSOLETE. A disease that involves the genitourinary system." [MONDO:patterns/location] comment: Reason: out of scope - grouping term. Terms to consider: 'reproductive system disorder' (MONDO:0005039), 'urinary system disorder' (MONDO:0002118). synonym: "disease of genitourinary system" EXACT [MONDO:patterns/location_top] synonym: "disease or disorder of genitourinary system" EXACT [] synonym: "disorder of genitourinary system" EXACT [MONDO:patterns/location_top] synonym: "disorder of the genitourinary system" EXACT [] synonym: "genitourinary system disease" EXACT [MONDO:patterns/location] synonym: "genitourinary system disease or disorder" EXACT [MONDO:design_pattern, MONDO:patterns/location] synonym: "syndrome of the genitourinary system" RELATED [] synonym: "urogenital disease" RELATED [] synonym: "urogenital disorder" RELATED [] xref: ICD10CM:N00-N99 {source="https://github.com/monarch-initiative/mondo/issues/4536", source="MONDO:obsoleteEquivalent", source="https://orcid.org/0000-0001-5208-3432", source="https://orcid.org/0000-0002-4142-7153"} xref: SCTID:42030000 {source="MONDO:obsoleteEquivalent"} xref: UMLS:C0080276 {source="MONDO:obsoleteEquivalent"} property_value: exactMatch http://identifiers.org/snomedct/42030000 property_value: exactMatch http://linkedlifedata.com/resource/umls/id/C0080276 property_value: exactMatch http://purl.bioontology.org/ontology/ICD10CM/N00-N99 property_value: IAO:0000231 "out of scope" xsd:string {source="MONDO:excludeGroupingMorpho"} property_value: IAO:0000233 https://github.com/monarch-initiative/mondo/issues/4113 xsd:anyURI is_obsolete: true consider: MONDO:0002118 consider: MONDO:0005039
Note that is_obsolete: true in this record, not sure if it's related to this issue.
is_obsolete: true
@everaldorodrigo @newgene @andrewsu
This may be a good issue to review for addressing vs dropping
assigned to @DylanWelzel since it's related to mydisease.info as well.
Somehow this particular MONDO ID does not exists in our mondo API:
https://biothings.ncats.io/mondo/disease/MONDO:0021145
(updated to MONDO version 2023-06-01)
Check the original
mondo.obo
file of that version, it does contains a record ofMONDO:0021145
:Note that
is_obsolete: true
in this record, not sure if it's related to this issue.