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biotite-dev
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biotite
A comprehensive library for computational molecular biology
https://www.biotite-python.org
BSD 3-Clause "New" or "Revised" License
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Do not create switcher entries for patch version
#623
padix-key
opened
10 hours ago
0
`DsspApp` is not usable with more recent `mkdssp` versions
#622
padix-key
opened
10 hours ago
0
Enable style checking for entire code base
#620
padix-key
opened
1 day ago
0
Handle embedded quote in mmcif
#619
0ut0fcontrol
opened
1 day ago
2
fix a bug in add two bond lists.
#618
0ut0fcontrol
opened
1 day ago
0
Use 'flower' as default color scheme
#617
padix-key
opened
2 days ago
0
Adding more tutorials
#616
padix-key
opened
2 days ago
2
Road to Biotite 1.0
#615
padix-key
opened
3 days ago
0
Removal of deprecated functionalities
#614
padix-key
opened
3 days ago
0
Implementing TRR/XTC support
#613
padix-key
opened
3 days ago
2
mdtraj 1.10 incompatibility
#612
tjmier
closed
6 days ago
0
pdbx get_sequence return dict of seq
#611
tjmier
closed
3 days ago
2
Fix indexing with inverse slices
#610
padix-key
closed
6 days ago
0
Indexing BondList with inverse slice does not preserve order
#609
padix-key
closed
6 days ago
0
Fix artifact name for source distribution
#608
padix-key
closed
1 week ago
0
Biotite dssp not running! Subprocess error: code 6
#607
padix-key
closed
11 hours ago
8
biotite 0.41.1 `.whl` not available for MacOS ARM
#605
BradyAJohnston
closed
3 days ago
4
Fix `Atom` `__repr__()` (#602)
#604
ljarosch
closed
1 week ago
4
Updated platform and tooling versions in CI
#603
padix-key
closed
2 weeks ago
0
Custom annotations do not appear in Atom `__repr__()`
#602
ljarosch
closed
1 week ago
1
`Numpy 2.0` is used when installing `Biotite`via pip.
#601
t0mdavid-m
closed
2 weeks ago
1
chain id parameter for structure.io.pdbx.get_sequence
#600
tjmier
closed
1 week ago
8
Add chain id specifier to pdbx.get_sequence
#599
tjmier
closed
2 weeks ago
3
Move build backend to 'hatch'
#598
padix-key
closed
2 weeks ago
0
Make ThrottleStatus a data class
#597
padix-key
closed
2 weeks ago
0
PubChem throttle control does not properly work
#596
padix-key
opened
2 weeks ago
0
get_structures not returning extra fields
#595
tjmier
closed
2 weeks ago
2
Allow SD files without terminal delimiter
#594
padix-key
closed
2 weeks ago
0
Fix bond inference for structures with insertion codes
#593
padix-key
closed
2 weeks ago
0
[BUG] Biotite's bond inference seems broken for some structures with specific insertion codes
#592
ljarosch
closed
2 weeks ago
3
Enable use of specific local CCD version
#591
ljarosch
closed
2 weeks ago
2
Adopt a code formatter and linter
#590
0ut0fcontrol
opened
3 weeks ago
2
Support multi-entry SDF files
#589
padix-key
closed
3 weeks ago
0
Ensure PDB columns are not exceeded
#588
padix-key
closed
3 weeks ago
0
Add superimposition method for homologous sequences
#587
padix-key
closed
3 weeks ago
0
Fix setting empty columns
#586
padix-key
closed
3 weeks ago
0
Stabilize test_pubchem/test_search_simple
#585
tcjaffe
closed
3 weeks ago
0
fix: typos
#584
Croydon-Brixton
closed
3 weeks ago
1
Fixed long locus ID issue in GB parser
#583
tcjaffe
closed
2 weeks ago
3
Passing empty array leads to malformed PDBx file
#582
padix-key
closed
3 weeks ago
0
Add `create_atom_names()`
#581
padix-key
closed
4 weeks ago
0
Add more descriptive error message for `residue()`
#580
padix-key
closed
1 month ago
0
Fix warning and error message in `get_structure()`
#579
padix-key
closed
1 month ago
0
Issue retrieving residue info for 3UQ
#578
xvlaurent
closed
1 month ago
2
Fix slicing with annotation on minus strand
#577
trichter
closed
1 month ago
0
Add repair functions
#576
padix-key
closed
1 month ago
0
Support V3000 CTAB
#575
padix-key
closed
1 month ago
0
Get 4x4 transformation matrix from `AffineTransform`
#574
padix-key
closed
1 month ago
0
Return empty dot bracket notation when no basepairs are found
#573
t0mdavid-m
closed
1 month ago
1
Add `one_letter_code()`
#572
padix-key
closed
1 month ago
0
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