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bioturing / hera-t

Hera-T, a fast and accurate tool for estimating gene abundances in single cell data generated by the 10X-Chromium protocol
https://bioturing.com/herat
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High number of unmapped reads #22

Open miccec opened 4 years ago

miccec commented 4 years ago

Hi, we are testing this nice tool and compare the results with cellranger. We observe a very high number of unmapped reads (~60% vs ~80-90% of mapped reads). Is there some parameter that we should set to obtain comparable results?

Thanks!