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biovault / ImaCytE

ImaCytE is an interactive tool for data-driven exploration of Imaging Mass Cytometry data as presented in the paper "ImaCytE: Visual Exploration of Cellular Micro-environments for Imaging Mass Cytometry Data".
Apache License 2.0
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What' the meaning of colour-coded triangle #6

Open StarXian opened 3 years ago

StarXian commented 3 years ago

Hi, In the tutorial, it's said "The triangle is colour-coded: White means more significant; Black means more probability that it happens by chance." But in the paper "ImaCytE: Visual Exploration of Cellular Microenvironments for Imaging Mass Cytometry Data", it seems that Black means more significant, while white means more probability that it happens by chance. What's the meaning of the triangle color-coded, could you please explain it in detail? Thank you so much.

asom commented 3 years ago

The triangle color-coding is performed according to the significance of the motif that is placed the specific triangle. The significance is being calculated according to a permutation test.

akedarg commented 4 months ago

As StarXian mentioned, can anyone confirm if black means more significant (paper says) or white means more significant (tutorial pdf says)? thank you.