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biovault / ImaCytE

ImaCytE is an interactive tool for data-driven exploration of Imaging Mass Cytometry data as presented in the paper "ImaCytE: Visual Exploration of Cellular Micro-environments for Imaging Mass Cytometry Data".
Apache License 2.0
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Uploading ome tiff and mask #7

Open aagamboa opened 3 years ago

aagamboa commented 3 years ago

Hello, I tried to upload a single 'ome.tiff' and 'mask.tiff' files into the ImaCytE, but even after waiting several hours the files were still loading. Is there a more efficient way to upload files? I am using MATLAB R2019a on a MacBook Pro (2.3GHz 8-Core Intel Core i9, 32GB memory) and the image is 1.5x1.5mm, the 'ome.tiff' file is 369.1 MB and the 'mask.tiff' file is 4.5 MB. I generated these tiff files using the Bodenmiller segmentation pipeline. Thank you, Alicia

janinemelsen commented 1 year ago

Hi Alicia,

Did you solve this? I am encountering the same issue.

Janine

aagamboa commented 1 year ago

Hi Janine,

Sorry I was not able to solve the issue.

Alicia

From: janinemelsen @.> Date: Wednesday, August 3, 2022 at 3:48 AM To: biovault/ImaCytE @.> Cc: Gamboa, Alicia @.>, Author @.> Subject: [External] Re: [biovault/ImaCytE] Uploading ome tiff and mask (#7) Hi Alicia, Did you solve this? I am encountering the same issue.⁠​ Janine — Reply to this email directly, view it on GitHub, or unsubscribe.⁠​ You are receiving this because you authored the thread.⁠​Message ID:⁠​ <biovault/ImaCytE/issues/7/1203785975 ZjQcmQRYFpfptBannerStart CAUTION: External Sender Do not click on links or open attachments unless you know the content is safe. Protect your username and password. ZjQcmQRYFpfptBannerEnd

Hi Alicia,

Did you solve this? I am encountering the same issue.

Janine

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a-rayford commented 1 year ago

See my comment on Issue #3. This might be related to filepath incompatibility between MacOS and Windows.

dblevenson commented 4 months ago

I am wondering if anyone has been able to solve this issue? I am encountering difficulty loading data (a single ome.tiff and mask.tiff) into the .exe ImaCytE. It says "please wait..." for hours and never uploads.

If anyone has successfully overcome this issue, please advise!