BIOWDL-420: Replace mv command with cp.

[JasperBoom]

In order to be able to use the moved files later in the pipeline, they also need to be present in the working directory.

Checklist

• [x] Pull request details were added to CHANGELOG.md
• [x] parameter_meta for each task is up to date.

[JasperBoom]

I will add the time_minutes with a separate PR later, so it doesn't conflict with my tests of the overall PacBio pipeline.