BIOWDL-450: Update/add new tasks to samtools and picard.

biowdl / tasks

A collection of reusable WDL tasks. Category:Other

https://biowdl.github.io/tasks/

MIT License

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BIOWDL-450: Update/add new tasks to samtools and picard. #215

Closed JasperBoom closed 4 years ago

JasperBoom commented 4 years ago

Checklist

[x] Pull request details were added to CHANGELOG.md
[x] parameter_meta for each task is up to date.

JasperBoom commented 4 years ago

Not using a sym-link in the samtools Faidx task results in this error: Invalid cross-device link. This does not happen with the sym-link, so I have put that back in.