Add target file input to samtools view

[rhpvorderman]

Checklist

• [x] Pull request details were added to CHANGELOG.md.
• [ ] Documentation was updated (if required).
• [x] parameter_meta was added/updated (if required).
• [ ] Submodule branches are on develop or a tagged commit.

[rhpvorderman]

Merging this without review as people are waiting.