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bird-house / birdhouse-deploy

Scripts and configurations to deploy the various birds and servers required for a full-fledged production platform
https://birdhouse-deploy.readthedocs.io/en/latest/
Apache License 2.0
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update `Magpie==4.1.1` and `Twitcher==0.10.0` #466

Open fmigneault opened 1 month ago

fmigneault commented 1 month ago

Overview

Security updates.

Changes

Non-breaking changes

Breaking changes

Related Issue / Discussion

PRs that are an agglomeration of vulnerability fixes flagged by Snyk.

Additional Information

CI Operations

birdhouse_daccs_configs_branch: master birdhouse_skip_ci: false

fmigneault commented 1 month ago

Manual trigger: http://daccs-jenkins.crim.ca/job/DACCS-iac-birdhouse/2742/

crim-jenkins-bot commented 1 month ago

E2E Test Results

DACCS-iac Pipeline Results

Build URL : http://daccs-jenkins.crim.ca:80/job/DACCS-iac-birdhouse/2742/
Result :x: FAILURE

BIRDHOUSE_DEPLOY_BRANCH : update-magpie-twitcher
DACCS_IAC_BRANCH : master
DACCS_CONFIGS_BRANCH : master
PAVICS_E2E_WORKFLOW_TESTS_BRANCH : master
PAVICS_SDI_BRANCH : master

DESTROY_INFRA_ON_EXIT : true
PAVICS_HOST : https://host-140-118.rdext.crim.ca

PAVICS-e2e-workflow-tests Pipeline Results

Tests URL : http://daccs-jenkins.crim.ca:80/job/PAVICS-e2e-workflow-tests/job/master/1656/

NOTEBOOK TEST RESULTS 
    
[2024-07-24T18:18:05.137Z] ============================= test session starts ==============================
[2024-07-24T18:18:05.137Z] platform linux -- Python 3.11.6, pytest-8.2.0, pluggy-1.5.0
[2024-07-24T18:18:05.137Z] rootdir: /home/jenkins/agent/workspace/PAVICS-e2e-workflow-tests_master
[2024-07-24T18:18:05.138Z] plugins: anyio-4.3.0, dash-2.17.0, nbval-0.11.0, tornasync-0.6.0.post2, xdist-3.5.0
[2024-07-24T18:18:05.138Z] collected 308 items
[2024-07-24T18:18:05.138Z] 
[2024-07-24T18:18:15.097Z] notebooks-auth/geoserver.ipynb ..................                        [  5%]
[2024-07-24T18:18:30.554Z] notebooks-auth/test_cowbird_jupyter.ipynb ......FFF.                     [  9%]
[2024-07-24T18:18:38.018Z] notebooks-auth/test_thredds.ipynb ...........                            [ 12%]
[2024-07-24T18:19:25.344Z] pavics-sdi-master/docs/source/notebooks/CaSR_basic.ipynb ......          [ 14%]
[2024-07-24T18:19:43.672Z] pavics-sdi-master/docs/source/notebooks/WCS_example.ipynb .......        [ 16%]
[2024-07-24T18:19:52.103Z] pavics-sdi-master/docs/source/notebooks/WFS_example.ipynb ......         [ 18%]
[2024-07-24T18:19:57.686Z] pavics-sdi-master/docs/source/notebooks/WMS_example.ipynb ........       [ 21%]
[2024-07-24T18:27:39.077Z] pavics-sdi-master/docs/source/notebooks/climex.ipynb ............        [ 25%]
[2024-07-24T18:27:39.078Z] pavics-sdi-master/docs/source/notebooks/eccc-geoapi-climate-stations.ipynb . [ 25%]
[2024-07-24T18:27:39.858Z] ...............                                                          [ 30%]
[2024-07-24T18:27:47.094Z] pavics-sdi-master/docs/source/notebooks/eccc-geoapi-xclim.ipynb .....    [ 32%]
[2024-07-24T18:27:57.824Z] pavics-sdi-master/docs/source/notebooks/esgf-dap.ipynb ......            [ 34%]
[2024-07-24T18:28:12.965Z] pavics-sdi-master/docs/source/notebooks/forecasts.ipynb ......           [ 36%]
[2024-07-24T18:28:18.614Z] pavics-sdi-master/docs/source/notebooks/opendap.ipynb .......            [ 38%]
[2024-07-24T18:28:23.142Z] pavics-sdi-master/docs/source/notebooks/pavics_thredds.ipynb .....       [ 39%]
[2024-07-24T18:31:46.792Z] pavics-sdi-master/docs/source/notebooks/regridding.ipynb ............... [ 44%]
[2024-07-24T18:32:43.838Z] .............                                                            [ 49%]
[2024-07-24T18:32:48.293Z] pavics-sdi-master/docs/source/notebooks/rendering.ipynb ....             [ 50%]
[2024-07-24T18:32:49.811Z] pavics-sdi-master/docs/source/notebooks/subset-user-input.ipynb ........ [ 52%]
[2024-07-24T18:33:05.845Z] .................                                                        [ 58%]
[2024-07-24T18:33:13.548Z] pavics-sdi-master/docs/source/notebooks/subsetting.ipynb ......          [ 60%]
[2024-07-24T18:33:14.489Z] pavics-sdi-master/docs/source/notebook-components/weaver_example.ipynb . [ 60%]
[2024-07-24T18:33:32.015Z] .........                                                                [ 63%]
[2024-07-24T18:33:41.485Z] finch-master/docs/source/notebooks/dap_subset.ipynb ...........          [ 67%]
[2024-07-24T18:33:50.467Z] finch-master/docs/source/notebooks/finch-usage.ipynb ......              [ 69%]
[2024-07-24T18:33:51.857Z] PAVICS-landing-master/content/notebooks/climate_indicators/PAVICStutorial_ClimateDataAnalysis-1DataAccess.ipynb . [ 69%]
[2024-07-24T18:33:54.925Z] .....                                                                    [ 71%]
[2024-07-24T18:34:13.282Z] PAVICS-landing-master/content/notebooks/climate_indicators/PAVICStutorial_ClimateDataAnalysis-2Subsetting.ipynb . [ 71%]
[2024-07-24T18:34:30.026Z] ............                                                             [ 75%]
[2024-07-24T18:34:48.141Z] PAVICS-landing-master/content/notebooks/climate_indicators/PAVICStutorial_ClimateDataAnalysis-3Climate-Indicators.ipynb . [ 75%]
[2024-07-24T18:35:11.823Z] .....s.                                                                  [ 77%]
[2024-07-24T18:35:18.426Z] PAVICS-landing-master/content/notebooks/climate_indicators/PAVICStutorial_ClimateDataAnalysis-4Ensembles.ipynb . [ 78%]
[2024-07-24T18:35:35.883Z] ..                                                                       [ 78%]
[2024-07-24T18:35:42.499Z] PAVICS-landing-master/content/notebooks/climate_indicators/PAVICStutorial_ClimateDataAnalysis-5Visualization.ipynb . [ 79%]
[2024-07-24T18:36:41.689Z] .........                                                                [ 82%]
[2024-07-24T18:36:51.735Z] PAVICS-landing-master/content/notebooks/climate_indicators/PAVICStutorial_ClimateDataAnalysis-6Regridding_Conversion.ipynb . [ 82%]
[2024-07-24T18:41:42.433Z] ....                                                                     [ 83%]
[2024-07-24T18:41:44.351Z] PAVICS-landing-master/content/notebooks/hydrology/PAVICStutorial_Hydrology-01_Intro.ipynb . [ 84%]
[2024-07-24T18:41:49.659Z] ....                                                                     [ 85%]
[2024-07-24T18:41:53.868Z] PAVICS-landing-master/content/notebooks/hydrology/PAVICStutorial_Hydrology-02_Calibration.ipynb . [ 85%]
[2024-07-24T18:41:59.199Z] .....                                                                    [ 87%]
[2024-07-24T18:42:03.407Z] PAVICS-landing-master/content/notebooks/hydrology/PAVICStutorial_Hydrology-03_Watershed_properties.ipynb . [ 87%]
[2024-07-24T18:42:28.222Z] .............                                                            [ 91%]
[2024-07-24T18:42:32.436Z] PAVICS-landing-master/content/notebooks/hydrology/PAVICStutorial_Hydrology-04_Time_series_analysis.ipynb . [ 92%]
[2024-07-24T18:42:33.508Z] ......                                                                   [ 94%]
[2024-07-24T18:42:35.806Z] notebooks/hummingbird.ipynb ............                                 [ 98%]
[2024-07-24T18:45:09.962Z] notebooks/stress-tests.ipynb ......                                      [100%]
[2024-07-24T18:45:09.962Z] 
[2024-07-24T18:45:09.963Z] =================================== FAILURES ===================================
tlvu commented 1 month ago

FYI le notebook cowbird n'a pas passé.

fmigneault commented 1 month ago

@tlvu Thanks. Will need to investigate some more... The error seems to be caused by a JSON parsing issue on the Jupyter API endpoint. Not sure what could have caused it since all other notebooks doing Magpie logins worked... Maybe I will have time Friday, but might be delayed until the end of August otherwise.