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bit-magpie / EEG-processing-python

EEG analysis tools
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<1 sec ValueError: invalid literal for int() with base 10: '09:01:17' #2

Open soso-maitha opened 2 years ago

soso-maitha commented 2 years ago

Hello, I got this error when I tried to read .edf files from https://physionet.org/content/ucddb/1.0.0/

import mne
import matplotlib.pyplot as plt 
from topograph import get_psds, plot_topomap

data = mne.io.read_raw_edf('ucddb002_lifecard.edf')

raw_data = data.get_data()
ch_data = raw_data[2:16,:]
pwrs, _ = get_psds(ch_data)

fig, ax = plt.subplots(figsize=(10,8))
plot_topomap(pwrs, ax, fig)
plt.show()
fig.savefig("topograph.png", bbox_inches='tight')

Output:

Extracting EDF parameters from files/ucddb002_lifecard.edf...
EDF file detected
---------------------------------------------------------------------------
ValueError                                Traceback (most recent call last)
Input In [16], in <cell line: 7>()
      3 from topograph import get_psds, plot_topomap
      5 file = "ucddb002_lifecard.edf"
----> 7 data = mne.io.read_raw_edf(file)
      8 print(type(data))
     10 raw_data = data.get_data()

File /anaconda/envs/azureml_py38/lib/python3.8/site-packages/mne/io/edf/edf.py:1331, in read_raw_edf(input_fname, eog, misc, stim_channel, exclude, infer_types, preload, verbose)