Closed HijaziHassan closed 4 months ago
Yes totally possible, for example in the interactive interface you can see it here:
Thank you for this awesome tool.
I am working with an unpublished data so the usi help me now. Actually, I was using the pa.annotate_spectrum
function with backend='spectrum_utils'
from pyteomics
library. There, I did not find any argument that allow me to annotate such kind of fragments.
Could you please point me at any?
If you directly use spectrum_utils itself, you can annotate spectra using MsmsSpectrum.annotate_proforma
.
In your case, you'll want to do the following:
ion_types
of annotate_proforma
.{"NH3": -17.026549}
as neutral_losses
. (Or set neutral_losses=True
to consider several common losses, as described in the API documentation.)
Hello,
Is there an option to annotate specific diagnostic ions (which are Immonium ions losing NH3). For example, Kacetyl it will be 126.09 m/z?
Thank you. Hassan