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bjmt
/
universalmotif
Motif manipulation functions for R.
GNU General Public License v3.0
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Adding a legend with view_motifs
#28
kentaloupe123
closed
4 weeks ago
1
[JOSS REVIEW] No community/contribution guidelines
#27
chrisamiller
closed
1 month ago
1
How to merge motifs with variable length of gap
#26
xiao00su
closed
6 months ago
7
Improves support for MEME custom alphabet. Closes #24.
#25
snystrom
closed
2 years ago
0
Can't run meme with custom alphabet
#24
manoloff
closed
2 years ago
7
R session aborted / fatal error when running read_homer from a list of motifs
#23
aspepin
closed
2 years ago
5
validObject_universalmotif(motifs) fails when strand is "*"
#22
doliv071
closed
2 years ago
2
run_meme alph parameters
#21
Irenexzwen
closed
3 years ago
4
Option to deprotect `motif` column in universalmotif_df
#20
snystrom
opened
3 years ago
3
Holdout unsupported data types during update_motifs
#19
snystrom
closed
3 years ago
1
fix extrainfo error & holdout columns during update_motifs
#18
snystrom
closed
3 years ago
12
update_motif on motifs with 1 extrainfo column gives misnamed results
#17
snystrom
closed
3 years ago
0
error in install
#16
JianGuoZhou3
closed
3 years ago
15
new view_motifs() function plots in alphabetical order instead of list input order
#15
snystrom
closed
3 years ago
2
fix to_list()
#14
snystrom
closed
3 years ago
0
Improve support for metadata-based manipulations
#13
snystrom
closed
3 years ago
22
Cannot get scan_sequences to report p-values
#12
OXB-DC
closed
3 years ago
11
importing pwd by read_cisbp
#11
avergro
closed
3 years ago
3
read_meme() yields out that "alphabet type cannot be detected" although "ALPHABET= ACGT" is provided
#10
ruixuan-zhang
closed
4 years ago
1
Fix summarise_motif dropping altname
#9
snystrom
closed
4 years ago
1
altname is dropped during summarise_motif
#8
snystrom
closed
4 years ago
0
Read meme alphabet additions
#7
snystrom
closed
4 years ago
4
read_meme fails when alphabet is DNA/RNA/AA-LIKE or custom
#6
snystrom
closed
4 years ago
0
Include altname information during write_meme()
#5
snystrom
closed
4 years ago
3
`create_motif` makes incorrect motif for amino acid sequences
#4
MattBrauer
closed
4 years ago
1
Error in convert_motifs for TFBStools-PFMatrixList
#3
VangelisTheodorakis
closed
4 years ago
10
Error with read_meme
#2
RdeBiotec
closed
4 years ago
5
shuffle_sequence truncated
#1
Mjaraespejo
closed
4 years ago
2